Re: [gmx-users] Calculating electron density profile of a lipid bilayer system

2019-05-31 Thread Azadeh Alavizargar
- > > > Message: 4 > Date: Fri, 31 May 2019 10:19:56 +0200 > From: Azadeh Alavizargar > To: gromacs.org_gmx-users@maillist.sys.kth.se > Subject: Re: [gmx-users] Calculating electron density profile of a > lipid bilayer system > Message

Re: [gmx-users] Calculating electron density profile of a lipid bilayer system

2019-05-31 Thread ABEL Stephane
1.417--> 1 + 0.417 HTH -- Message: 4 Date: Fri, 31 May 2019 10:19:56 +0200 From: Azadeh Alavizargar To: gromacs.org_gmx-users@maillist.sys.kth.se Subject: Re: [gmx-users] Calculating electron density profile of a lipid bilayer system Message-

Re: [gmx-users] Calculating electron density profile of a lipid bilayer system

2019-05-31 Thread Azadeh Alavizargar
Dear Stephane Thank you very much for your reply. I am sorry, I had not noticed you have answered before and was thinking my message has not been sent so I sent it again. I am sorry, but I did not get you completely. How should I take into account the number of electrons? I thought that I just

Re: [gmx-users] Calculating electron density profile of a lipid bilayer system

2019-05-30 Thread ABEL Stephane
Hello I gave you a response few days ago For the calculations of the EDP you have to take into account of the charges of the atom (it is mentioned at the end of density tool ("known issue")) . So modify the number of electrons to have the "real" electron numbers in you electron.dat file