and also this one:
http://www3.mpibpc.mpg.de/groups/de_groot/cecam2015/peptide_mutation/
On 3/31/16, SAKO MIRZAIE wrote:
> hi
> you can do MD simulation and compute free energy of folding,
> individually. for detect the folding frame or structure, use have to
> regard to
hi
you can do MD simulation and compute free energy of folding,
individually. for detect the folding frame or structure, use have to
regard to RMSD. please look at the following webpage:
http://www3.mpibpc.mpg.de/groups/de_groot/compbio2/p8/index.html
On 3/31/16, Tushar Ranjan Moharana
Hi SAKO MIRZAIE,
Thanks for your reply. But how can we calculate difference in folding free
energy by doing 2 separate simulations? Please clarify (at least give some
hints or references).
Thanks a lot.
"A society with free knowledge is better than a society with free food"
--
Tushar Ranjan
you can use of swisspdbviewer, discovery studio or any other softer to
do mutation of pdb file. then do MD simulation as a separate protein.
On 3/30/16, Tushar Ranjan Moharana wrote:
> Hi Everyone,
>
> I want to find the change in delta G between a protein and its