> Dear gromacs users,
>
> Sorry for repeating my question.
>
> I didn't receive any email so I couldn't reply and I missed
>
> them.
Hi,
Justin replied in this mail:
https://mailman-1.sys.kth.se/pipermail/gromacs.org_gmx-users/2019-September/126735.html
Best,
John
>
> I am using following
On 9/25/19 5:50 AM, Mahsa Rezaei wrote:
Dear Dr. Warren
Thanks for your response .
I made my protein-membrane system with charmm-gui.
so my force is charmm36.
I used the equilibration input files that charmm-gui provide ,
and run 400 ns simulation for equilibration of my system .
RMSD ,
Dear Dr. Warren
Unfortunately,I missed your reply!
Thanks for your response .
I made my protein-membrane system with charmm-gui.
so my force is charmm36.
I used the equilibration input files that charmm-gui provide ,
and run 400 ns simulation for equilibration of my system .
RMSD ,
Does it do that without using the pull code, i.e. just performing NPT
simulation? What is physically happening? Sounds like the bilayer is
unstable. What forcefield is this?
Catch ya,
Dr. Dallas Warren
Drug Delivery, Disposition and Dynamics
Monash Institute of Pharmaceutical Sciences, Monash