Re: [gmx-users] g_helixorient help

2014-02-07 Thread rajat desikan
Thanks for the super detailed reply, Bipin. I will try this out! On Fri, Jan 31, 2014 at 3:04 PM, bipin singh bipinel...@gmail.com wrote: Inter helical angle using *g_bundle * # 1. Do in make_ndx: # make_ndxGenerate indexes describing extremities of # the two helices. Select the

Re: [gmx-users] g_helixorient help

2014-01-30 Thread rajat desikan
Hi All, Any suggestions? Thanks. On Mon, Jan 27, 2014 at 5:01 PM, rajat desikan rajatdesi...@gmail.comwrote: Hi All, I am trying to calculate the angle between the axes of two alpha helices (say A and B) in my simulation. I have separate index files for the residues pertaining to each