Re: [gmx-users] problem while calculating order parameter

2020-02-15 Thread Devargya Chakraborty
Thanks On Sat, Feb 15, 2020, 8:02 PM Justin Lemkul wrote: > > > On 2/15/20 4:50 AM, Devargya Chakraborty wrote: > > i want to calculate the order prameter between two carbon atom namrd C01 > > and C03 in my topology file but while calculating, i am getting the > > following error. > > gmx order

Re: [gmx-users] problem while calculating order parameter

2020-02-15 Thread Justin Lemkul
On 2/15/20 4:50 AM, Devargya Chakraborty wrote: i want to calculate the order prameter between two carbon atom namrd C01 and C03 in my topology file but while calculating, i am getting the following error. gmx order is designed to compute deuterium order parameters in alkyl chains. It

Re: [gmx-users] problem while calculating order parameter

2020-02-15 Thread shakira shukoor
I guess you have not made your index file correctly. It should contain only the group for which you will calculate the order parameter. On Sat, Feb 15, 2020 at 3:21 PM Devargya Chakraborty < devargyachakraborty@gmail.com> wrote: > i want to calculate the order prameter between two carbon