On 5/25/17 3:12 PM, Gilberto Valdes wrote:
Thanks for your answer,
I would like to use charmm27 force field, it covers the hole AMP molecule
if I use the ADE residue with the 5PHO and 3TER patches implemented in
charmm software.
The problem is how to patch the ADE equivalent residue (named RA)
Thanks for your answer,
I would like to use charmm27 force field, it covers the hole AMP molecule
if I use the ADE residue with the 5PHO and 3TER patches implemented in
charmm software.
The problem is how to patch the ADE equivalent residue (named RA) in
gromacs, and then how to linked to the
On 5/24/17 7:08 PM, Gilberto Valdes wrote:
Hi,
I'm interested in simulating a DNA ligase with an AMP bound covalently via
its P atom to the side chain of a Lysine residue. I can not find any
parameters for that. I really appreciate any help in how to achieve this.
