[gmx-users] make test gives errors in G2016

2016-08-06 Thread Jacob Nowatzke
Hello, I have not had this issue before with GROMACS 5.1.2. I installed 2016 last night and everything was going without a hitch until make test. I used: cmake.. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=on DGMX_USE_OPENCL=on I have Ubuntu 14.04 LTS, cmake 3.6.0, fftw

[gmx-users] Upgrading to Gromacs/5.1 - Problems with Umbrella Sampling

2016-08-06 Thread Dan Gil
Hi, I am changing from Gromacs/4.6 to Gromacs/5.1, and I have a piece of .mdp file that I am confused with. I am pulling an atom of solute, indexed a_Cooh, towards the COM of solvent. This is a slab geometry, with the plane normal to the z-axis direction. My output (pullx.xvg) should contain the

[gmx-users] Postdoctoral Fellowship in Modelling and Simulation in Life and Materials Sciences

2016-08-06 Thread Bruno Escribano
Postdoctoral Fellowship in Modelling and Simulation in Life and Materials Sciences at the Basque Center for Applied Mathematics (BCAM) in Bilbao (Spain). Job Offer Topic: Multiscale modeling of perspective cathode materials for Sodium-Ion batteries PI in charge: Elena Akhmatskaya Salary and