Re: [gmx-users] Drude force field

2016-10-28 Thread Xianchi Dong
some advise? Best, Xianchi On Fri, Oct 28, 2016 at 3:17 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 10/28/16 2:48 PM, Xianchi Dong wrote: > >> Thanks for your reply. >> Do I need to copy the ff file to any folder? >> >> > Either the working dir

Re: [gmx-users] Drude force field

2016-10-28 Thread Xianchi Dong
Thanks for your reply. Do I need to copy the ff file to any folder? Best, Xianchi > On Oct 28, 2016, at 1:56 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > >> On 10/28/16 1:39 PM, Xianchi Dong wrote: >> Dear all, >> Does anyone have a detailed protocol to

[gmx-users] Drude force field

2016-10-28 Thread Xianchi Dong
Dear all, Does anyone have a detailed protocol to install Drude polarized force field on Gromacs? Best, Xianchi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read

[gmx-users] QMMM install on GMX5.1

2016-10-14 Thread Xianchi Dong
Hi all, Does anyone know how to install qmmm code like mopac to gmx5.1? Best, Xianchi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For

Re: [gmx-users] QMMM install on GMX5.1 (Xianchi Dong)

2016-10-16 Thread Xianchi Dong
t; > Follow the instructions at http://wwwuser.gwdg.de/~ggroenh/qmmm.html > > You will also need to set the following variable at install time: > > -DGMX_QMMM_MOPAC=ON > > -- > Clinton King > Graduate Student > Chemistry Department > Brigham Young University > >

Re: [gmx-users] QMMM install on GMX5.1 (Xianchi Dong)

2016-10-16 Thread Xianchi Dong
ailed doesn't give > people much insight into how to assist you. > > There are a myriad of possibilities, but without an actual error message to > go off, we're all in the dark here. > > Regards, > > Andrew > > On Mon, Oct 17, 2016 at 11:20 AM, Xianchi Dong <dongxian.

[gmx-users] Drude polarization ff for Ca2+ and Mg2+

2018-08-31 Thread Xianchi Dong
Dear GMX users, I am wondering where I can find the polarization parameter for Ca2+ and/or Mg2+ for Gromacs? Best, Xianchi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read