Re: [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups

2016-04-06 Thread Dai Ling (IHPC)
n Lemkul Sent: Wednesday, 6 April, 2016 5:59 PM To: gmx-us...@gromacs.org Subject: Re: [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups On 4/6/16 2:38 AM, Dai Ling (IHPC) wrote: > I defined energy groups in .mdp file at the very beginning. Then after 1st > m

Re: [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups

2016-04-06 Thread Dai Ling (IHPC)
I defined energy groups in .mdp file at the very beginning. Then after 1st mdrun, I did create a new .tpr file with everything the same & rerun. But it didn't output correctly, any suggestions? -Original Message- From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se [mailto:gromacs.o

[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups

2016-04-05 Thread Dai Ling (IHPC)
Dear gmx-user: I want to plot the non-bond interaction energy between energy-groups. With reading from the history of this mailing-list, I need to use "rerun" to obtain these values. Since I have set all the energy groups in .mdp file initially. So that, after the first mdrun, I just use the sa