> I think you don`t need to build topology separately. Using appropriate
force field will do. For protein-DNA simulation amber99sb works well.
Amber99bsc1.ff is a new module available for gromacs users. You may use
them or it is always better to refer literature to use the more
appropriate
I am getting error in topolbuild:
Fatal error.
Source code file: readmol2.c, line: 693
Atom 1 (O5') has 2 connections when allowed 0
I have used the command
./topolbuild -dir /home/aayatti/topolbuild1_2_1/dat/leap/parm -ff amber -n
tripos97
.mol2 file that I am using is as follows:
@MOLECULE
QCH
