Re: [gmx-users] Calculating the displacement of an atom QUERY

2013-12-24 Thread Justin Lemkul



On 12/24/13, 2:38 AM, rbbioinfo wrote:

Hi, I want to plot the total displacement of an atom/ion along Z axis with
respect to time. Anybody kindly help me regarding how to calculate the
movement of any atom using gromacs. An early response will be highly
appreciated.



Sounds like a job for g_traj.

-Justin

--
==

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

==
--
Gromacs Users mailing list

* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
mail to gmx-users-requ...@gromacs.org.


[gmx-users] Calculating the displacement of an atom QUERY

2013-12-23 Thread rbbioinfo
Hi, I want to plot the total displacement of an atom/ion along Z axis with
respect to time. Anybody kindly help me regarding how to calculate the
movement of any atom using gromacs. An early response will be highly
appreciated.

Thanking you,
Rajabrata

--
View this message in context: 
http://gromacs.5086.x6.nabble.com/Calculating-the-displacement-of-an-atom-QUERY-tp5013503.html
Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
-- 
Gromacs Users mailing list

* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
mail to gmx-users-requ...@gromacs.org.