[gmx-users] Glycosylation of ASN

Hi, Have you tried reducing the timestep in mdp? Yes, I tried. But no hope. On Mon, May 4, 2020, 2:52 AM Naba https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users>> wrote: >* Dear users and developers, *>>* I have spent extensive amount of time to model glycosylated ASN residues

Re: [gmx-users] Glycosylation of ASN

Hi, Have you tried reducing the timestep in mdp? On Mon, May 4, 2020, 2:52 AM Naba wrote: > Dear users and developers, > > I have spent extensive amount of time to model glycosylated ASN residues > covalently linked with N-ACETYL-D-GLUCOSAMINE (NAG) in a glycoprotein using > Amber99SB-ILDN

[gmx-users] Glycosylation of ASN

Dear users and developers, I have spent extensive amount of time to model glycosylated ASN residues covalently linked with N-ACETYL-D-GLUCOSAMINE (NAG) in a glycoprotein using Amber99SB-ILDN force field. Though there may be easy way to do this with CHARMM-GUI, I want it for Amber force field for