Re: [gmx-users] Query regarding gaps between lipid molecules in a heterogenous system of 1464 dopc and dopg

2015-02-09 Thread Justin Lemkul
On 2/9/15 11:00 AM, Agnivo Gosai wrote: Hi Antara Did you check the plot of the potential energy against the simulation time ? You can visualize the convergence of your energy minimisation from the above plot. Energy minimization, by definition, converges to some value (but there is no

Re: [gmx-users] Query regarding gaps between lipid molecules in a heterogenous system of 1464 dopc and dopg

2015-02-09 Thread Justin Lemkul
On 2/9/15 7:41 AM, Antara mazumdar wrote: i got the following result after EM of this system of mine. writing lowest energy coordinates. Steepest Descents converged to Fmax 1000 in 15280 steps Potential Energy = -5.0853170e+06 Maximum force = 9.9438867e+02 on atom 179440 Norm of force

[gmx-users] Query regarding gaps between lipid molecules in a heterogenous system of 1464 dopc and dopg

2015-02-09 Thread Antara mazumdar
i got the following result after EM of this system of mine. writing lowest energy coordinates. Steepest Descents converged to Fmax 1000 in 15280 steps Potential Energy = -5.0853170e+06 Maximum force = 9.9438867e+02 on atom 179440 Norm of force = 7.8095098e+00 Should i go ahead with