[gmx-users] xpm2ps
Hello everyone When I use xpm2ps in Gromacs 2018.3 and open .eps file, I see that a balck line cover the numbers in y and x axis. Any person can help me?! -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] xpm2ps (2018.3) does print axis labels
Sorry for the double post, I resend my message (below) since I have received no response from you guys Hello, I have a problem with gmx xpm2ps (v5.1.4 and 2018.2) with a xpm files generated with gmx_mpi densmap. For example If I use the following xpm (1) and m2p (2) files and the following command the x and y labels are not plotted in the eps figure.. The xpm seems OK for me. It is a bug mx_mpi xpm2ps -f MY_2DXY_DensMap.xpm -rainbow blue -gradient 1 1 1 -aver z -di 2D_DensityMap_params.m2p -o MY_2DXY_DensMap -xpm test.xpm You can download the xpm and m2p here for testing 1) https://drive.google.com/file/d/1LI5Y2-OCYyQS2FImRK9Axhcu-TLBQ9gg/view?usp=sharing 2) https://drive.google.com/file/d/1ETZtBAqrcn17SJHB6aKPYI-lWOdAF9Sp/view?usp=sharing Can you help me ? Thank you in advance Stéphane -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] xpm2ps (2018.3) does print axis labels
Hello, I have a problem with gmx xpm2ps (v5.1.4 and 2018.2) with a xpm files generated with gmx_mpi densmap. For example If I use the following xpm (1) and m2p (2) files and the following command the x and y labels are not plotted in the eps figure. Same behavior problem occurs if I did not a m2p file. The xpm OK for me. mx_mpi xpm2ps -f MY_2DXY_DensMap.xpm -rainbow blue -gradient 1 1 1 -aver z -di 2D_DensityMap_params.m2p -o MY_2DXY_DensMap -xpm test.xpm You can download the xpm and m2p here 1) https://drive.google.com/file/d/1ETZtBAqrcn17SJHB6aKPYI-lWOdAF9Sp/view?usp=sharing 2) https://drive.google.com/file/d/1LI5Y2-OCYyQS2FImRK9Axhcu-TLBQ9gg/view?usp=sharing Can you help me ? Thank you Stéphane -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] xpm2ps
Dear all, I have generated *.xpm file using dssp and trying to convert it into eps i used gmx xpm2ps -f dssp.xpm -o abc.eps -do new.m2p -di new.m2p and my new.m2p file is given as https://drive.google.com/file/d/0BxaQk_pcR9viRWtVdlhRdU90SlU/view? usp=sharing When i visualize the eps file using GIMP the x-axis and y-axis tails are missing as given in Fig https://drive.google.com/file/d/0BxaQk_pcR9viV3ROSGdHdDUtZDQ/view?usp=sharing Can anyone tell me what modification i need to make in the *.m2p file to obtain perfect eps file My *.xpm file is given https://drive.google.com/file/d/0BxaQk_pcR9vicU14eXRObzhla2c/view? usp=sharing -- Regards, Nikhil Maroli -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] xpm2ps
Hello, I would like to change the scale of x axis and y axis of my dssp.eps file by different amounts. Example with xpm2ps -skip command I can write out every nr-th row and nr-th column but I want every nr-th row and mr-th column. Please suggest if it is possible to do so. Thanks in advance. Nidhi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
Re: [gmx-users] xpm2ps
On 2014-02-28 16:39, Nidhi Katyal wrote: Hello, I would like to change the scale of x axis and y axis of my dssp.eps file by different amounts. Example with xpm2ps -skip command I can write out every nr-th row and nr-th column but I want every nr-th row and mr-th column. Please suggest if it is possible to do so. Thanks in advance. Nidhi Sure. You have to provide a .m2p file. -- David van der Spoel, Ph.D., Professor of Biology Dept. of Cell Molec. Biol., Uppsala University. Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. sp...@xray.bmc.uu.sehttp://folding.bmc.uu.se -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
