Re: [gmx-users] 3dc + GPU

2014-07-10 Thread Szilárd Páll
On Thu, Jul 10, 2014 at 11:10 AM, Ondrej Kroutil okrou...@gmail.com wrote: Dear Mark, Thank for suggestion concerning switching between CPU and GPU. Second option was the one I was looking for! Thank you. And this reminds me I have one remark about new 5.0 version: in previous versions, when

[gmx-users] 3dc + GPU

2014-07-09 Thread Ondrej Kroutil
Hi gromacs users and developers, I have troubles with simulations of the system with surface (slab geometry) using GPU and Verlet cut-off scheme. When I run this simulation on CPU everything goes right and ions dissolved in the water above the surface seems to behave normally. But when I switch to

Re: [gmx-users] 3dc + GPU

2014-07-09 Thread Mark Abraham
On Jul 9, 2014 7:39 PM, Ondrej Kroutil okrou...@gmail.com wrote: Hi gromacs users and developers, I have troubles with simulations of the system with surface (slab geometry) using GPU and Verlet cut-off scheme. When I run this simulation on CPU everything goes right and ions dissolved in the