Re: [gmx-users] Box size to be considered for a protein of length 500 residues and dimension of protein is 6.5nm maximum.

On 5/18/18 12:39 PM, SHYANTANI MAITI wrote: Dear all, What should be the value of d in editconf command for a protein-protein complex of 500residues and length of protein is 6.5nm maximum. I have simulated it using the command: editconf -f conf.gro -bt cubic -d 6 -o box.gro (considering 6 as

[gmx-users] Box size to be considered for a protein of length 500 residues and dimension of protein is 6.5nm maximum.

Dear all, What should be the value of d in editconf command for a protein-protein complex of 500residues and length of protein is 6.5nm maximum. I have simulated it using the command: editconf -f conf.gro -bt cubic -d 6 -o box.gro (considering 6 as the value of d). I have considered the value of