Re: [gmx-users] Charmm-Gui output to Gromacs

2018-05-04 Thread Justin Lemkul
On 5/4/18 5:35 AM, Mark Abraham wrote: Hi, Charmm-GUI writes GROMACS files natively, doesn't it? It does. I haven't run the Glycan Reader directly but it is embedded as a component of the Quick MD Simulator, which gives all necessary GROMACS input files (coordinates, topology, and .mdp).

Re: [gmx-users] Charmm-Gui output to Gromacs

2018-05-04 Thread Mark Abraham
Hi, Charmm-GUI writes GROMACS files natively, doesn't it? Mark On Fri, May 4, 2018 at 10:16 AM Frederic Schneider < frederic.schnei...@tu-bs.de> wrote: > Hello everyone, > > i would like to convert the topology files from the output of the > Charmm-Gui/Glycan Reader(.psf file) to the Gromacs

[gmx-users] Charmm-Gui output to Gromacs

2018-05-04 Thread Frederic Schneider
Hello everyone, i would like to convert the topology files from the output of the Charmm-Gui/Glycan Reader(.psf file) to the Gromacs format (.itp, .top). Is there a preferred script or program to do this task? Best regards, Frederic Frederic Schneider, M.Sc. TU Braunschweig Institut für