Re: [gmx-users] Computational electrophysiology issues with membrane leakage

Hi, the output file gives you the numbers of the atoms that seem to move from compartment A to B without passing a channel. I would look at their trajectories and inspect which path they actually take. The channel trimer also needs to be whole at the beginning of the simulation, otherwise the

[gmx-users] Computational electrophysiology issues with membrane leakage

Dear all, I’m trying to set up the computational electrophysiology protocol. To do this, I’m trying to replicate the following article http://www.sciencedirect.com/science/article/pii/S0006349511007065 but instead of using g_membed I used a CG approximation (using MARTINI ff + insane script to set