Re: [gmx-users] Definition in martini CG force field

2015-11-12 Thread mohammad agha
Hi Petet, Thanks. Sent from Yahoo Mail on Android On Wed, Nov 11, 2015 at 16:06, Peter Kroon wrote: Hi Sara, first off, you're probably better off asking these Martini-specific questions on the Martini forum (cgmartini.nl) Secondly, some answers are inline On 11/11/15

[gmx-users] Definition in martini CG force field

2015-11-11 Thread mohammad agha
Dear Gromacs users, May I ask you to help me, Please? 1- I want to run the system with surfactant named Cocamide MEA in martini CG force field. I defined the beads as is follows: C-C-C-C . C1 C-C-C . C2 C-C-C . C2 O " C-C-NH . P5 C-C-OH . P2 Are the

Re: [gmx-users] Definition in martini CG force field

2015-11-11 Thread Peter Kroon
Hi Sara, first off, you're probably better off asking these Martini-specific questions on the Martini forum (cgmartini.nl) Secondly, some answers are inline On 11/11/15 10:57, mohammad agha wrote: > Dear Gromacs users, > May I ask you to help me, Please? > 1- I want to run the system with