Re: [gmx-users] Fwd: Normal Mode Analysis

2013-12-10 Thread Sathish Kumar
[ > gromacs.org_gmx-users-boun...@maillist.sys.kth.se] Em Nome De Sathish > Kumar [sathishk...@gmail.com] > Enviado: segunda-feira, 9 de Dezembro de 2013 4:21 > Para: Discussion list for GROMACS users > Assunto: [gmx-users] Fwd: Normal Mode Analysis > > Dear users, > >

Re: [gmx-users] Fwd: Normal Mode Analysis

2013-12-10 Thread Joaquim Rui de Castro Rodrigues
...@maillist.sys.kth.se] Em Nome De Sathish Kumar [sathishk...@gmail.com] Enviado: segunda-feira, 9 de Dezembro de 2013 4:21 Para: Discussion list for GROMACS users Assunto: [gmx-users] Fwd: Normal Mode Analysis Dear users, I am trying to do NMA First i did energy minimization using

[gmx-users] Fwd: Normal Mode Analysis

2013-12-08 Thread Sathish Kumar
Dear users, I am trying to do NMA First i did energy minimization using .mdp file with conjugate gradient method, Next i calculated hessian matrix by using integrator = nm Then i calculated the eigen vectors from 7 to 100 using g_nmeig to analyze eigen vectors i use the comm

[gmx-users] Fwd: Normal Mode Analysis

2013-12-06 Thread Sathish Kumar
Dear users, I am trying to do NMA First i did energy minimization using .mdp file with conjugate gradient method, Next i calculated hessian matrix by using integrator = nm I was calculated the eigen vectors, eigen values and eigen frequences by using the following command g