Re: [gmx-users] Grompp not producing tpr files

2019-06-18 Thread Israel Estrada
Great! Thanks!!! -Israel From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se on behalf of Dallas Warren Sent: Monday, June 17, 2019 10:31:43 PM To: GROMACS users Subject: Re: [gmx-users] Grompp not producing tpr files Before you go any further you need

Re: [gmx-users] Grompp not producing tpr files

2019-06-17 Thread Dallas Warren
gt; -Israel > > > > ____________ > > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < > > gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Bratin > > Kumar Das <177cy500.bra...@nitk.edu.in> > > Sent: W

Re: [gmx-users] Grompp not producing tpr files

2019-06-17 Thread Israel Estrada
. From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se on behalf of Paul Bauer Sent: Thursday, June 13, 2019 8:08:58 AM To: gmx-us...@gromacs.org Subject: Re: [gmx-users] Grompp not producing tpr files Hello, Yes, the last part indicates an error that should not h

Re: [gmx-users] Grompp not producing tpr files

2019-06-13 Thread Peter Stern
rael > > > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se > on behalf of Bratin Kumar > Das <177cy500.bra...@nitk.edu.in> > Sent: Wednesday, June 12, 2019 7:00:55 PM > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users]

Re: [gmx-users] Grompp not producing tpr files

2019-06-13 Thread Paul Bauer
Thanks again!! > -Israel > > > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < > gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Bratin > Kumar Das <177cy500.bra...@nitk.edu.in> > Sent: Wednesday, June 12,

Re: [gmx-users] Grompp not producing tpr files

2019-06-13 Thread Israel Estrada
___ From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se on behalf of Bratin Kumar Das <177cy500.bra...@nitk.edu.in> Sent: Wednesday, June 12, 2019 7:00:55 PM To: gmx-us...@gromacs.org Subject: Re: [gmx-users] Grompp not producing tpr files Hi Give here the full error On Thu

Re: [gmx-users] Grompp not producing tpr files

2019-06-12 Thread Bratin Kumar Das
Hi Give here the full error On Thu 13 Jun, 2019, 1:35 AM Mark Abraham, wrote: > Hi, > > Was grompp exiting normally, or crashing? Are you looking in the right > place, for a file of the right name? :-) > > Mark > > On Wed., 12 Jun. 2019, 18:42 Israel Estrada, wrote: > > > Hello users, > > >

Re: [gmx-users] Grompp not producing tpr files

2019-06-12 Thread Mark Abraham
Hi, Was grompp exiting normally, or crashing? Are you looking in the right place, for a file of the right name? :-) Mark On Wed., 12 Jun. 2019, 18:42 Israel Estrada, wrote: > Hello users, > > > I'm running into problems trying to grompp; I'm using the command > > > gmx grompp -f ions.mdp -c

[gmx-users] Grompp not producing tpr files

2019-06-12 Thread Israel Estrada
Hello users, I'm running into problems trying to grompp; I'm using the command gmx grompp -f ions.mdp -c etc_box.gro -o ions.tpr -p topol.top and the process shows no error messages, but output files are not being generated. I'm running this on a small molecule, about 20 atoms, with the