Thankyou!
On Fri, Jan 10, 2020 at 6:00 AM Justin Lemkul wrote:
>
>
> On 1/9/20 9:42 AM, Navneet Kumar wrote:
> > Thank You, sir!
> >
> > What If I want to extend the residues like choose c-alpha of 150-200 &
> > 60-70 in a single index group ?
>
> 3 & r 60-70 | 3 & r 150-200
>
> Type "help" at
On 1/9/20 9:42 AM, Navneet Kumar wrote:
Thank You, sir!
What If I want to extend the residues like choose c-alpha of 150-200 &
60-70 in a single index group ?
3 & r 60-70 | 3 & r 150-200
Type "help" at the make_ndx prompt for examples of how to use the program.
-Justin
On Wed, Jan 8,
Thank You, sir!
What If I want to extend the residues like choose c-alpha of 150-200 &
60-70 in a single index group ?
On Wed, Jan 8, 2020 at 6:21 PM Justin Lemkul wrote:
>
>
> On 1/8/20 4:49 AM, Christian Blau wrote:
> > Hi Navnett,
> >
> >
> > gmx select will be your friend.
> >
> >
> > At
On 1/8/20 4:49 AM, Christian Blau wrote:
Hi Navnett,
gmx select will be your friend.
At the bottom of
http://manual.gromacs.org/documentation/current/onlinehelp/selections.html
you'll find some example commands. Something along the lines of
gmx select -select 'name CA and resid >
Thank You, Sir!
On Wed, Jan 8, 2020 at 3:19 PM Christian Blau wrote:
> Hi Navnett,
>
>
> gmx select will be your friend.
>
>
> At the bottom of
>
> http://manual.gromacs.org/documentation/current/onlinehelp/selections.html
>
> you'll find some example commands. Something along the lines of
>
>
Hi Navnett,
gmx select will be your friend.
At the bottom of
http://manual.gromacs.org/documentation/current/onlinehelp/selections.html
you'll find some example commands. Something along the lines of
gmx select -select 'name CA and resid > 149 and resid < 211'
should work.
It's a very
Sorry, it should be 150-200 residues.
On Wed, Jan 8, 2020 at 3:09 PM Navneet Kumar wrote:
> Hello Everyone!
>
>
> How to create an index group for Backbone/C-alpha for a specific set of
> residues from protein? (Say Protein with 200 amino acid; want to create an
> index group for the backbone
Hello Everyone!
How to create an index group for Backbone/C-alpha for a specific set of
residues from protein? (Say Protein with 200 amino acid; want to create an
index group for the backbone of residues 150-210).
Regards
Navneet Kumar
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