Re: [gmx-users] Ion binding to DNA

2015-06-11 Thread Justin Lemkul
On 6/11/15 1:40 AM, soumadwip ghosh wrote: Hello, I am asked by one of the reviewers of my paper about the distribution of ions ( Mg2+) bound to a single stranded DNA as a function of simulation time at different salt concentrations. In order to do that I have calculated the RDF of

[gmx-users] Ion binding to DNA

2015-06-10 Thread soumadwip ghosh
Hello, I am asked by one of the reviewers of my paper about the distribution of ions ( Mg2+) bound to a single stranded DNA as a function of simulation time at different salt concentrations. In order to do that I have calculated the RDF of ions from the closest atom of DNA using g_rdf