Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system

2015-05-22 Thread Mark Abraham
could look at? Thanks, Cara From: mark.j.abra...@gmail.com Date: Wed, 20 May 2015 11:47:43 + To: gmx-us...@gromacs.org; gromacs.org_gmx-users@maillist.sys.kth.se Subject: Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system Hi, Sorry that was so

Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system

2015-05-21 Thread Cara Kreck
...@gmail.com Date: Wed, 20 May 2015 11:47:43 + To: gmx-us...@gromacs.org; gromacs.org_gmx-users@maillist.sys.kth.se Subject: Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system Hi, Sorry that was so painful for you. The LINCS documentation in the manual suggests

Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system

2015-05-20 Thread Mark Abraham
: Fri, 15 May 2015 14:31:16 +0800 Subject: [gmx-users] Lincs all-bonds causing instability in otherwise stable system I forgot to include an example of my mdp files. I've tried varying the timestep, running with and without pressure coupling, and obviously changing the constraints

Re: [gmx-users] Lincs all-bonds causing instability in otherwise stable system

2015-05-19 Thread Cara Kreck
a similar topology to work with LINCS. Cara From: cara.kr...@student.curtin.edu.au To: gromacs.org_gmx-users@maillist.sys.kth.se Date: Fri, 15 May 2015 14:31:16 +0800 Subject: [gmx-users] Lincs all-bonds causing instability in otherwise stable system I forgot to include an example of my mdp