Re: [gmx-users] Memory issues using -ac option of gmx hbond

2017-08-07 Thread Mark Abraham
acs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Jared > Sagendorf <sagen...@usc.edu> > Sent: Monday, August 07, 2017 5:46 PM > To: gromacs.org_gmx-users@maillist.sys.kth.se > Subject: [gmx-users] Memory issues using -ac option of gmx hbond > > I'm trying to analyzin

[gmx-users] Memory issues using -ac option of gmx hbond

2017-08-07 Thread Jared Sagendorf
I'm trying to analyzing hydrogen bonds between a DNA and protein complex. When using the -ac option of gmx hbond, I'm getting segmentation faults which look like an out-of-memory problem. However, I'm giving the process 64gb of memory, and an additional 64gb of virtual memory. How memory