Re: [gmx-users] QM/MM optimization in gromacs/gaussian (nikol...@spbau.ru)

2018-03-16 Thread Groenhof, Gerrit
essage: 2 > Date: Fri, 2 Mar 2018 13:01:09 +0300 > From: nikol...@spbau.ru > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] QM/MM optimization in gromacs/gaussian > (nikol...@spbau.ru) > Message-ID: <40fa81b002d9ded18e6f471f19a1ada7.squir...@mail.spbau

Re: [gmx-users] QM/MM optimization in gromacs/gaussian

2018-03-15 Thread nikolaev
: 2 > Date: Fri, 2 Mar 2018 13:01:09 +0300 > From: nikol...@spbau.ru > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] QM/MM optimization in gromacs/gaussian > (nikol...@spbau.ru) > Message-ID: <40fa81b002d9ded18e6f471f19a1ada7.squir...@mail.spbau.ru> > Co

Re: [gmx-users] QM/MM optimization in gromacs/gaussian

2018-03-02 Thread Groenhof, Gerrit
...@spbau.ru To: gmx-us...@gromacs.org Subject: Re: [gmx-users] QM/MM optimization in gromacs/gaussian (nikol...@spbau.ru) Message-ID: <40fa81b002d9ded18e6f471f19a1ada7.squir...@mail.spbau.ru> Content-Type: text/plain;charset=UTF-8 And which one (and with what parameters) is better for

Re: [gmx-users] QM/MM optimization in gromacs/gaussian (nikol...@spbau.ru)

2018-03-02 Thread nikolaev
ge: 3 > Date: Thu, 1 Mar 2018 12:44:53 +0300 > From: nikol...@spbau.ru > To: gmx-us...@gromacs.org > Subject: [gmx-users] QM/MM optimization in gromacs/gaussian > Message-ID: <ff117f222d3d76fdce88a36282ae90b6.squir...@mail.spbau.ru> > Content-Type: text/plain;charset=UTF-

Re: [gmx-users] QM/MM optimization in gromacs/gaussian (nikol...@spbau.ru)

2018-03-01 Thread Groenhof, Gerrit
Hi, It is possible, but only using gromacs' internal optizers: SD(steep), CG, or BFGS. And you can only optimise minima, not transition states. Best, Gerrit Message: 3 Date: Thu, 1 Mar 2018 12:44:53 +0300 From: nikol...@spbau.ru To: gmx-us...@gromacs.org Subject: [gmx-users] QM/MM

[gmx-users] QM/MM optimization in gromacs/gaussian

2018-03-01 Thread nikolaev
Dear all! I need to perform the QM/MM optimization in the Gromacs/Gaussian interface. However, I know that in 2015 this was not possible. The question: is there such an opportunity nowadays (I use gromacs 5.1.2) and which kind of parameters I need to write in the .mdp file in order to obtain