Re: [gmx-users] Question about water insertion

2018-08-03 Thread Kevin Boyd
Hi, You can play around with the -radius and -scale parameters if you're getting clashes you don't like. However, it seems like you really should be using gmx solvate. You could accomplish your goal with "gmx solvate -cs tip4p.gro -box 10.1103 10.34753 3.958 -maxsol 13853" Kevin On Fri,

[gmx-users] Question about water insertion

2018-08-03 Thread G R
I have one water molecule in my gro file as below: TIP4P 4 1SOL OW1 0.054 0.005 0.022 1SOLHW12 0.009 0.072 0.073 1SOLHW23 0.142 0.041 0.008 1SOL MW4 0.060 0.018 0.026 0.00 0.000 0.000