Re: [gmx-users] RMSD values consideration

Try using trjconv to remove pbc before analysis Regards,Ahmed On Wed, 28 Mar, 2018 at 8:43 am, SHYANTANI MAITI wrote: Dear all, After using this command for computation of rmsd of backbone of protein protein complex consisting of three proteins :

[gmx-users] RMSD values consideration

Dear all, After using this command for computation of rmsd of backbone of protein protein complex consisting of three proteins : /home/locuz/apps/gromacs/5.1/bin/gmx_mpi rms -f md_0_1.trr -s md_0_1.tpr The rmsd is drastically increasing from 1 to 6 nm and after that it again decreases to 1nm. can