[gmx-users] Triclinic box is too skewed

2020-04-18 Thread Jun Zhou
Hi all, I apply a deform at the xy direction of the box, the rate is 0.01 nm/ps but I met this error : Warning: Triclinic box is too skewed. Box (3x3): Box[0]={ 1.06717e+01, 0.0e+00, 0.0e+00} Box[1]={ 5.34312e+00, 1.06717e+01, 0.0e+00}

[gmx-users] Triclinic box is too skewed

2020-04-12 Thread Jun Zhou
Hi all, I want to simulate a liquid system with surfactant micelle in the middle, then I apply a velocity at xy direction. However, I always meet the error "triclinic box is too skewed" and the simulation will stop even using a very small shear rate. Have you met this simulation before, any