Re: [gmx-users] Umbrella sampling along PCA eigenvector using make_edi

2016-03-31 Thread Kutzner, Carsten
Dear Hendrik, that indeed looks a bit strange. If you provide the necessary input files for a test, I could have a look at what might be wrong. You can put them somewhere for download or email them directly to me (not to the list, they will not be accepted). Carsten > On 30 Mar 2016, at 16:11,

[gmx-users] Umbrella sampling along PCA eigenvector using make_edi

2016-03-30 Thread Hendrik Goeddeke
Hi everyone, I want to do umbrella sampling along a PCA eigenvector using 'gmx make_edi'. The eigenvectors of the protein backbone atoms were computed using 'gmx covar'. The command for generating the 'sam.edi' file looks like the following: gmx make_edi -s topol.tpr -f eigenvec.trr -eig