Re: [gmx-users] Umbrella sampling with restraint on the center of mass of ligand

2020-01-15 Thread Justin Lemkul
On 1/15/20 6:32 AM, gmx user1 wrote: Dear GMX users I am doing umbrella sampling to obtain a PMF relative to the translocation of a ligand within a membrane protein. I want to add an harmonic potential to restrain the center of mass of the ligand in each window , similarly to the protocols

[gmx-users] Umbrella sampling with restraint on the center of mass of ligand

2020-01-15 Thread gmx user1
Dear GMX users I am doing umbrella sampling to obtain a PMF relative to the translocation of a ligand within a membrane protein. I want to add an harmonic potential to restrain the center of mass of the ligand in each window , similarly to the protocols used by Subramanian et al (