Re: [gmx-users] energy group tables

2013-11-26 Thread Mark Abraham
Try it! You surely have a test run that will show that your tables work, before you launch into production work, right? :-) On Nov 26, 2013 5:16 AM, Chandan Choudhury iitd...@gmail.com wrote: On Mon, Nov 25, 2013 at 11:22 PM, Humberto Saint-Martin xibas...@gmail.comwrote: Hi, Chandan,

Re: [gmx-users] energy group tables

2013-11-26 Thread Humberto Saint-Martin
The order is irrelevant, except that the tables should be consistent; the way you wrote it: energygrp_table = A A B B C C A B A C B C implies 6 interactions, thus 6 tables: table_A_A.xvg table_B_B.xvg table_C_C.xvg table_A_B.xvg (NOT table_B_A.xvg) table_A_C.xvg (NOT table_C_A.xvg)

Re: [gmx-users] energy group tables

2013-11-25 Thread Humberto Saint-Martin
Hi, Chandan, Within the *.mdp file you have to write the pairs without hyphens. Following your example, if you specify energygrps = A B C then the tables should be declared as folows: energygrp_table = A A A B A C B C C C Needless to say, the corresponding tables should be present in the

Re: [gmx-users] energy group tables

2013-11-25 Thread Chandan Choudhury
On Mon, Nov 25, 2013 at 11:22 PM, Humberto Saint-Martin xibas...@gmail.comwrote: Hi, Chandan, Within the *.mdp file you have to write the pairs without hyphens. Following your example, if you specify energygrps = A B C then the tables should be declared as folows: energygrp_table = A