[gmx-users] g_order (warning)

2014-01-15 Thread shahab shariati
Hi all I have DOPC lipid in my system. After preparing index file exactly based on how-to on the g_order page, I used following command to obtain order parameters of acyl chains: g_order -s md.tpr -f final.xtc -n sn1.ndx -d z -od deuter_sn1.xvg -o order_sn1.xvg I encountered following warnings:

Re: [gmx-users] g_order (warning)

2014-01-15 Thread Justin Lemkul
On 1/15/14, 9:30 AM, shahab shariati wrote: Hi all I have DOPC lipid in my system. After preparing index file exactly based on how-to on the g_order page, I used following command to obtain order parameters of acyl chains: g_order -s md.tpr -f final.xtc -n sn1.ndx -d z -od deuter_sn1.xvg -o