Re: [gmx-users] gmx insert-molecules not adding the required number of molecules

Hi, Adding a big thing, then lots of small things randomly and then lots of medium sized things randomly isn't going to work very well to give you something approximately close-packed at the end. You're just not likely to end up with exactly enough holes suitable for things of medium size. So

[gmx-users] gmx insert-molecules not adding the required number of molecules

Hi all, I have recently been looking at the dynamics of protein in presence of urea+osmolyte. The protein I have taken is a chicken villin headpiece subdomain (HP-36). It is inside a cubic box of 141 nm3 volume. 8M urea corresponding to this box volume = 680 number of urea molecules and I