Have you ever heard of anyone successfully using the gau script available at http://wwwuser.gwdg.de/~ggroenh/qmmm.html? I don't have access to the Gaussian source code and cannot create the modified links. However, according to the link I just cited, it can be done without modifying links.
Clinton > Message: 6 > Date: Fri, 10 Jun 2016 16:18:19 +0000 > From: Mark Abraham <mark.j.abra...@gmail.com> > To: gmx-us...@gromacs.org, gromacs.org_gmx-users@maillist.sys.kth.se > Subject: Re: [gmx-users] interfacing with Gaussian 09 > Message-ID: > < > camnumatzr0defibc_b2b7jhnexkszzqd_husemo6f_n-obw...@mail.gmail.com> > Content-Type: text/plain; charset=UTF-8 > > Hi, > > Please check out http://wwwuser.gwdg.de/~ggroenh/qmmm.html and > http://www.gromacs.org/Downloads/Installation_Instructions/compiling_QMMM > > Mark > > On Fri, Jun 10, 2016 at 5:13 PM Clinton King <clintonkin...@chem.byu.edu> > wrote: > > > I'm having difficulty interfacing GROMACS with Gaussian 09. Is there > anyone > > who has successfully done it who is willing to give some advice? > > > > -- > > Clinton King > > Graduate Student > > Chemistry Department > > Brigham Young University > > > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.