Re: [gmx-users] select an atom for "only" residue with make_ndx [ Resolved ]

2019-05-17 Thread ABEL Stephane
Thanks Justin it worked. For the record, I have also found that 27 & a C31 C32 C33 is equivalent to a C31 | aC32 | aC33 & rLIPIDC or aC31 | aC32 | aC33 & 27. Note For the two latter commands the order of "r27 or rLIPIDC" is important Thanks again On 5/16/19 5:44 AM, ABEL Stephane

Re: [gmx-users] select an atom for "only" residue with make_ndx

2019-05-16 Thread Justin Lemkul
On 5/16/19 5:44 AM, ABEL Stephane wrote: Thanks Justin but it does not work either LIPIDC is indeed in a group (#27) So I when typed with GMX5.1.4 or GMX2018.2 LIPIDC & a C31 | a C32 | a C33 ---> Syntax error: "LIPIDC & a C31 | a C32 | a C33" 27 & a C31 | a C32 | a C33 ---> the command

[gmx-users] select an atom for "only" residue with make_ndx

2019-05-16 Thread ABEL Stephane
Thanks Justin but it does not work either LIPIDC is indeed in a group (#27) So I when typed with GMX5.1.4 or GMX2018.2 LIPIDC & a C31 | a C32 | a C33 ---> Syntax error: "LIPIDC & a C31 | a C32 | a C33" 27 & a C31 | a C32 | a C33 ---> the command works but I selected "all" the C31, C32

Re: [gmx-users] select an atom for "only" residue with make_ndx

2019-05-15 Thread Justin Lemkul
On 5/15/19 11:03 AM, ABEL Stephane wrote: Hello all, I am currently doing simulations of a model of membranes with different types of lipids (LIPIDA, LIPIDB and LIPIDC) and I would like to select a group of atoms for only the same lipid with make_ndx. Below an example Three different

[gmx-users] select an atom for "only" residue with make_ndx

2019-05-15 Thread ABEL Stephane
Hello all, I am currently doing simulations of a model of membranes with different types of lipids (LIPIDA, LIPIDB and LIPIDC) and I would like to select a group of atoms for only the same lipid with make_ndx. Below an example Three different lipids : LIPIDA, LIPIDB and LIPIDC contain few