Re: [gmx-users] source code for velocity information

2018-03-21 Thread Paul bauer
Hello, in newer versions of Gromacs you can generate documentation from the comments in the code using Doxygen. This is then build and included in a local copy of the html documentation when running `make  webpage`, or `make doxygen-all` You can then navigate the code documentation there or at

Re: [gmx-users] source code for velocity information

2018-03-21 Thread 刘杰
hellow Joe JordanSo glad to receive your adcives, I have installed gromacs5.1.1, and useing gromacs for three years , but I know little about a newer version you can use the automatically generated function documentation as you said , could you give more details about this. any help will be

Re: [gmx-users] source code for velocity information

2018-03-21 Thread Viveca Lindahl
Try posting in gmx-developers. -- Viveca On Wed, Mar 21, 2018 at 2:56 AM, 刘杰 wrote: > Dear all, Iam trying to add viscidity bond code to gromacsc 4.0.7. I > found the harmonic bond code in bondfree.c ,but i could not conform which > source document include the velocity

Re: [gmx-users] source code for velocity information

2018-03-21 Thread Joe Jordan
A few suggestions: *use a newer version of gromacs; 4.x is no longer supported with bug fixes *use find or grep to find what you want *if you use a newer version you can use the automatically generated function documentation to find what you want On Wed, Mar 21, 2018 at 2:44 AM, 刘杰

[gmx-users] source code for velocity information

2018-03-20 Thread 刘杰
Dear all, Iam trying to add viscidity bond code to gromacsc 4.0.7. I found the harmonic bond code in bondfree.c ,but i could not conform which source document include the velocity information . Can somebody please advise me on how to overcome this issue?Thank you. Regards, jieliu -- Gromacs

[gmx-users] source code for velocity information

2018-03-20 Thread 刘杰
Dear all, Iam trying to add viscidity bond code to gromacsc 4.0.7. I found the harmonic bond code in bondfree.c ,but i could not conform which source document include the velocity information . Can somebody please advise me on how to overcome this issue?Thank you. Regards, jieliu --