Re: [gmx-users] specbonds

2018-08-23 Thread Justin Lemkul
On 8/23/18 4:09 AM, Momin Ahmad wrote: Hi, i have two different residues and i want a bond defines between them. I know i have to use the specbond.dat file but how do i implement the additional potentials like stretching/angles/dihedrals? Is it enough to just describe them in

[gmx-users] specbonds

2018-08-23 Thread Momin Ahmad
Hi, i have two different residues and i want a bond defines between them. I know i have to use the specbond.dat file but how do i implement the additional potentials like stretching/angles/dihedrals? Is it enough to just describe them in ffbonded.itp? Example: i have CH3 and NH as different