Re: [gmx-users] D- &/or L- cmap for charmm36

2016-10-12 Thread Justin Lemkul
ssage: 3 Date: Wed, 21 Sep 2016 15:08:23 -0400 From: Justin Lemkul https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users>> To: gmx-users at gromacs.org<https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users> Subject: Re: [gmx-users] D- &/or L- cmap for charm

Re: [gmx-users] D- &/or L- cmap for charmm36

2016-10-12 Thread HENRY WITTLER
gt; Date: Wed, 21 Sep 2016 15:08:23 -0400 > From: Justin Lemkul vt.edu<https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users>> > To: gmx-users at > gromacs.org<https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users> > Subject: Re: [gmx-us

Re: [gmx-users] D- &/or L- cmap for charmm36 (gromacs.org_gmx-users Digest, Vol 149, Issue 71)

2016-10-04 Thread Justin Lemkul
Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia Tel: 0432901627 Message: 3 Date: Wed, 21 Sep 2016 15:08:23 -0400 From: Justin Lemkul To: gmx-us...@gromacs.org Subject: Re: [gmx-users] D- &/or L- cmap for charmm36 Message-ID: <5156078a-2572-401b-ec29-6

Re: [gmx-users] D- &/or L- cmap for charmm36 (gromacs.org_gmx-users Digest, Vol 149, Issue 71)

2016-10-03 Thread HENRY WITTLER
Message: 3 Date: Wed, 21 Sep 2016 15:08:23 -0400 From: Justin Lemkul To: gmx-us...@gromacs.org Subject: Re: [gmx-users] D- &/or L- cmap for charmm36 Message-ID: <5156078a-2572-401b-ec29-62dd5ae8b...@vt.edu> Content-Type: text/plain; charset=windows-1252; format=flowed On 9/21/16 1:4

Re: [gmx-users] D- &/or L- cmap for charmm36

2016-09-21 Thread Justin Lemkul
On 9/21/16 1:43 AM, HENRY WITTLER wrote: Greetings. If anyone can give insight please. I want to do a MD for insulin a 51aa protein, mutating one residue from L to D-Ser. I have runned 1.5us for the L- Ser (with cmap), and want to repeat it for the D-Ser, with gmx v.5.0.4 charmm36 mars14

[gmx-users] D- &/or L- cmap for charmm36

2016-09-20 Thread HENRY WITTLER
Greetings. If anyone can give insight please. I want to do a MD for insulin a 51aa protein, mutating one residue from L to D-Ser. I have runned 1.5us for the L- Ser (with cmap), and want to repeat it for the D-Ser, with gmx v.5.0.4 charmm36 mars14 version. It seems in the traditional CHARM