Hi Mark,
I use the Cb's to define a plane, and I use virtual sites to place beads in
that plane.
So the Cb's do not have non-bonded interactions with other beads, but they
feel a force via the virtual sites.
The problem is that my simulations are very unstable and that this is
probably due to the
Hi,
If there's no interactions with CB then what's the point?
Mark
On Tue, Mar 13, 2018, 09:28 Douwe Pollmann wrote:
> Hi Mark,
>
> Thanks for your reaction!
>
> 2018-03-12 18:08 GMT+01:00 Mark Abraham :
>
> > Hi,
> >
> > On Mon, Mar 12, 2018 at 4:19 PM Douwe Pollmann
> > wrote:
> >
> > > Dea
Hi Mark,
Thanks for your reaction!
2018-03-12 18:08 GMT+01:00 Mark Abraham :
> Hi,
>
> On Mon, Mar 12, 2018 at 4:19 PM Douwe Pollmann
> wrote:
>
> > Dear Gromacs users,
> >
> > I am currently working on a coarse-grained model where I want to fix
> atoms
> > (Cb's) on a certain distance from Ca-
Hi,
On Mon, Mar 12, 2018 at 4:19 PM Douwe Pollmann
wrote:
> Dear Gromacs users,
>
> I am currently working on a coarse-grained model where I want to fix atoms
> (Cb's) on a certain distance from Ca-Ca bonds, so that they can rotate
> freely. This freedom will be restricted by a dihedral that det
Dear Gromacs users,
I am currently working on a coarse-grained model where I want to fix atoms
(Cb's) on a certain distance from Ca-Ca bonds, so that they can rotate
freely. This freedom will be restricted by a dihedral that determines the
relative orientation between the Cb's.
I am using distance