Thank you Justin! I delete the phosphate group and the problem is resolved !
Best regards
Sting
From: Justin Lemkul
Date: 2020-04-26 00:20:44
To: gmx-us...@gromacs.org
Subject: Re: [gmx-users] Why there is no phosphorous atom in the "DA5" residue
in dna.rtp>
>
>On 4/25/20 12:18 PM,
On 4/25/20 12:18 PM, Tingguang.S wrote:
Dear all,
When I generated the amber99sb force filed topology of a DNA molecule with gmx, a
error code appeared: "Atom P in residue DA 1 was not found in rtp entry DA5 with 30
atoms". I tried to fix this but found there was no P atoms in all the
Dear all,
When I generated the amber99sb force filed topology of a DNA molecule with
gmx, a error code appeared: "Atom P in residue DA 1 was not found in rtp entry
DA5 with 30 atoms". I tried to fix this but found there was no P atoms in all
the 5' nucleic acid residues in dna.rtp.
Can
