Hi Shahee,
If you are willing to go beyond GROMACS you could also do this with
Biopython (see for example
https://github.com/biopython/biopython/issues/2163) or BioJulia (see
https://biojulia.net/BioStructures.jl/stable/documentation.html#Spatial-calculations-1).
Best,
Joe
On 15/08/2019 11:00, gromacs.org_gmx-users-requ...@maillist.sys.kth.se
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> Today's Topics:
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> 1. inter-residue contact map (SHAHEE ISLAM)
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> --
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> Message: 1
> Date: Wed, 14 Aug 2019 20:12:59 +0530
> From: SHAHEE ISLAM
> To: gmx-users
> Subject: [gmx-users] inter-residue contact map
> Message-ID:
>
> Content-Type: text/plain; charset="UTF-8"
>
> hello,
> i want to calculate the contact map between two different proteins. Using
> mdmat it is possible to calculate the contact map within a protein. But can
> anyone please suggest me how i can calculate the inter-residue contact map
> between two proteins using gromacs.
> thanking you
> shahee
>
>
> --
>
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