Hi,
When I use the tool, gmx analyze -dist, on the generated file from gmx
mindist for the number of contact, I can get the probability of number of
contacts. So I think if an appropriate index file and cut off distance are
defined by using this approach, I can get the probability of the first
Hi Mark,
Thank you for your reply! Actually, I should clarify my last post because
it seems that I repeated my question :-)
When I use the tool that Justin suggested, gmx analyze -dist, on the
generated file from gmx mindist for the number of contact, I can get the
probability of number of
Hi,
Which GROMACS tools documentation did you check to see whether it can be
done already? :-) I don't know the answer, but that's where to start!
Mark
On Thu., 28 Feb. 2019, 10:43 Mahsa, wrote:
> Thank you very much for your comments!
>
> How would it be possible to get probability vs.
Thank you very much for your comments!
How would it be possible to get probability vs. number of contacts or
probability vs coordination number averaged across the simulations? Can it
be done directly with Gromacs tools or I need some scripts for that?
Best regards,
Mahsa
On Thu, Feb 28, 2019
On 2/28/19 8:59 AM, Mahsa wrote:
Hi Justin,
Could you please comment on my questions in the previous post?
Best regards,
Mahsa
-- Forwarded message -
From: Mahsa
Date: Sun, Feb 17, 2019 at 2:36 PM
Subject: Re: [gmx-users] Probability of number of atomic contacts
To:
