Re: [gmx-users] Question on energygrps setting

2020-05-07 Thread Justin Lemkul
On 5/7/20 10:57 AM, Devargya Chakraborty wrote: I think I couldn't frame the question correctly. Let's say I have a silica surface and I have water droplet on it and after a proper nvt simulation I want to calculate the interaction energy of the water droplet with the surface then how can I

Re: [gmx-users] Question on energygrps setting

2020-05-07 Thread Devargya Chakraborty
I think I couldn't frame the question correctly. Let's say I have a silica surface and I have water droplet on it and after a proper nvt simulation I want to calculate the interaction energy of the water droplet with the surface then how can I use the energy grps option for analysis. Thanks

Re: [gmx-users] Question on energygrps setting

2020-05-07 Thread Justin Lemkul
On 5/7/20 10:49 AM, Devargya Chakraborty wrote: Suppose my system contains an anion a cation and water and I have done an nvt simulation.after the completion I want to see the energy profile of the individual groups like the cation or the anion etc. Can anybody guide me how to use the energy

Re: [gmx-users] Question on energygrps setting

2020-05-07 Thread Devargya Chakraborty
Suppose my system contains an anion a cation and water and I have done an nvt simulation.after the completion I want to see the energy profile of the individual groups like the cation or the anion etc. Can anybody guide me how to use the energy grps option in analysing that. Thanks Devargya

Re: [gmx-users] Question on energygrps setting

2020-05-07 Thread Justin Lemkul
On 5/6/20 6:31 PM, Lei Qian wrote: Dear users, I know interaction energy calculation is carried out via energygrps setting in mdp file. Because free energy-related settings do not include this energygrps setting, so I think this energygrps setting may NOT be related to free energy settings.