Re: [gmx-users] calculating pairwise interactions

2018-04-16 Thread Nikhil Maroli
Changing these parameters is not good, you may need to refer the forcefield original articles. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read

Re: [gmx-users] calculating pairwise interactions

2018-04-15 Thread Justin Lemkul
On 4/15/18 7:23 AM, Mark Abraham wrote: Hi, You can use energy groups in a tpr for a rerun, but you will not get any long-range contribution. Neither does any force field that I know of produce a useful quantity from such a calculation. Again, I'll bang the drum a little bit for CHARMM here

Re: [gmx-users] calculating pairwise interactions

2018-04-15 Thread Sahithya S Iyer
Thanks Mark ! By long range interactions value do you mean those beyond rvdw and rcoulomb ? Can I increase these cut-off and get some more interactions ? On Sun, Apr 15, 2018 at 4:53 PM, Mark Abraham wrote: > Hi, > > You can use energy groups in a tpr for a rerun, but

Re: [gmx-users] calculating pairwise interactions

2018-04-15 Thread Mark Abraham
Hi, You can use energy groups in a tpr for a rerun, but you will not get any long-range contribution. Neither does any force field that I know of produce a useful quantity from such a calculation. Mark On Sun, Apr 15, 2018, 06:46 Sahithya S Iyer wrote: > Hi gmx users, > >