On 10/12/16 1:16 PM, Nikhil Maroli wrote:
Dear all, I have a nanotube embed perpendicular to the lipid bilayer , I would like to observe is there any changes in the orientation of tube with respect to initial position (the deviation from the perpendicular position/time) during the simulation . Can I find any gromacs tools for the same ? I'm not sure the possibilities of gmx angle becuase of - It should be noted that the index file must contain atom triplets for angles or atom quadruplets for dihedrals. If this is not the case, the program will crash. )!
You want gmx gangle -g1 angle -g2 z -Justin -- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 629 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
