Re: [gmx-users] genbox + python bug?

2015-03-13 Thread Marcelo Depólo
Thanks for the insights, Mark. It was a 'aprun' issue. When I remove it from the command, everything worked out. -- Marcelo 2015-03-13 14:10 GMT-03:00 Mark Abraham mark.j.abra...@gmail.com: On Fri, Mar 13, 2015 at 5:46 PM, Marcelo Depólo marcelodep...@gmail.com wrote: Hey, I have a

Re: [gmx-users] genbox + python bug?

2015-03-13 Thread Mark Abraham
On Fri, Mar 13, 2015 at 5:46 PM, Marcelo Depólo marcelodep...@gmail.com wrote: Hey, I have a python script running gmx commands (version 4.6.7) until the following: *if systype == 'system_1' or systype == 'system_2':genboxcommand = aprun -n 1 genbox_mpi -cs spc216.gro -cp + prefix +