01/01: Add missing use-modules clause.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit d53aeeafccb91fd03c6c540153720717eceb92a4 Author: Ricardo Wurmus Date: Thu Sep 6 04:53:32 2018 +0200 Add missing use-modules clause. This is a follow-up to commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2. Sorry!

branch master updated (79b283e -> d53aeea)

2018-09-05 Thread Ricardo Wurmus
rekado pushed a change to branch master in repository guix. from 79b283e gnu: ccache: Update to 3.4.3. new d53aeea Add missing use-modules clause. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions

01/03: gnu: libmpdclient: Update to 2.15.

2018-09-05 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit a5c70c2e0e91ede6061ba130c27e5fdedbcbf2d8 Author: Tobias Geerinckx-Rice Date: Thu Sep 6 02:29:48 2018 +0200 gnu: libmpdclient: Update to 2.15. * gnu/packages/mpd.scm (libmpdclient): Update to 2.15. --- gnu/packages/m

branch master updated (37a6cdb -> 79b283e)

2018-09-05 Thread Tobias Geerinckx-Rice
nckx pushed a change to branch master in repository guix. from 37a6cdb git: Don't require users to specifiy "origin/" for branches. new a5c70c2 gnu: libmpdclient: Update to 2.15. new d83477a gnu: font-fira-code: Update to 1.205. new 79b283e gnu: ccache: Upda

02/03: gnu: font-fira-code: Update to 1.205.

2018-09-05 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit d83477adf92f18bd3a19b1ab2d22a0312bbaf294 Author: Tobias Geerinckx-Rice Date: Thu Sep 6 02:23:49 2018 +0200 gnu: font-fira-code: Update to 1.205. * gnu/packages/fonts.scm (font-fira-code): Update to 1.205. --- gnu/pa

03/03: gnu: ccache: Update to 3.4.3.

2018-09-05 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 79b283e433be171c7917fd5d9f10fa2185862a36 Author: Tobias Geerinckx-Rice Date: Thu Sep 6 02:21:26 2018 +0200 gnu: ccache: Update to 3.4.3. * gnu/packages/ccache.scm (ccache): Update to 3.4.3. [arguments]: Remove ob

branch master updated (00a43cb -> 37a6cdb)

2018-09-05 Thread Ludovic Court�
civodul pushed a change to branch master in repository guix. from 00a43cb gnu: pigx-scrnaseq: Use latest version of Pandoc. new cb341c1 channels: Fix external channel builds. new 37a6cdb git: Don't require users to specifiy "origin/" for branches. The 2 revisions lis

01/02: channels: Fix external channel builds.

2018-09-05 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit cb341c121919877ae6267a6460c0c17536d06eff Author: Ludovic Courtès Date: Wed Sep 5 22:42:16 2018 +0200 channels: Fix external channel builds. This fixes a regression introduced in ca719424455465fca4b872c371daf2

02/02: git: Don't require users to specifiy "origin/" for branches.

2018-09-05 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 37a6cdbf1b3503d3e60840a176318284b1f7ca25 Author: Ludovic Courtès Date: Wed Sep 5 23:31:51 2018 +0200 git: Don't require users to specifiy "origin/" for branches. Fixes . Reported b

103/103: gnu: pigx-scrnaseq: Use latest version of Pandoc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 00a43cb81cecb30d40f9940407c9f1ba08d3d38e Author: Ricardo Wurmus Date: Wed Sep 5 19:57:09 2018 +0200 gnu: pigx-scrnaseq: Use latest version of Pandoc. * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Repla

98/103: gnu: r-modelmetrics: Update to 1.2.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit f33a4748b7343a0f2ae3e560047b6eeca0f95235 Author: Ricardo Wurmus Date: Wed Sep 5 19:53:52 2018 +0200 gnu: r-modelmetrics: Update to 1.2.0. * gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0. [propag

102/103: gnu: pigx-bsseq: Use latest version of Pandoc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c2b4f81e51bab9a3ca6f2d1ba81ab1ff3b573ab4 Author: Ricardo Wurmus Date: Wed Sep 5 19:56:53 2018 +0200 gnu: pigx-bsseq: Use latest version of Pandoc. * gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace

101/103: gnu: pigx-chipseq: Use latest version of Pandoc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 7cd40c8c5dee1b323117ec85787566505be2d9ad Author: Ricardo Wurmus Date: Wed Sep 5 19:56:38 2018 +0200 gnu: pigx-chipseq: Use latest version of Pandoc. * gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace

100/103: gnu: pigx-rnaseq: Use latest version of Pandoc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit ca248f1db90c2e7b01d734aaa51d330a29fe0937 Author: Ricardo Wurmus Date: Wed Sep 5 19:55:56 2018 +0200 gnu: pigx-rnaseq: Use latest version of Pandoc. * gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace

95/103: gnu: r-ggthemes: Update to 4.0.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 314e8e763f9a2b3a3d5f98e8e435691f9dc01501 Author: Ricardo Wurmus Date: Wed Sep 5 19:52:05 2018 +0200 gnu: r-ggthemes: Update to 4.0.1. * gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1. [propagated-inp

96/103: gnu: r-rann: Update to 2.6.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 8e499d756a4a7c5f875e023da2500536bdc10258 Author: Ricardo Wurmus Date: Wed Sep 5 19:53:17 2018 +0200 gnu: r-rann: Update to 2.6. * gnu/packages/statistics.scm (r-rann): Update to 2.6. --- gnu/packages/statistics.sc

92/103: gnu: r-gtools: Update to 3.8.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 8da236a377f4c0c6679334bcc76704d858ae088f Author: Ricardo Wurmus Date: Wed Sep 5 19:50:43 2018 +0200 gnu: r-gtools: Update to 3.8.1. * gnu/packages/statistics.scm (r-gtools): Update to 3.8.1. --- gnu/packages/stati

85/103: gnu: r-later: Update to 0.7.4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2e6909baf0512cb5f4de9553e6dad3329db7e47c Author: Ricardo Wurmus Date: Wed Sep 5 19:39:46 2018 +0200 gnu: r-later: Update to 0.7.4. * gnu/packages/cran.scm (r-later): Update to 0.7.4. --- gnu/packages/cran.scm | 4

76/103: gnu: r-xts: Update to 0.11-0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 69bf449bf10fe3c6ea5fc643ee49ed6ee8e50b84 Author: Ricardo Wurmus Date: Wed Sep 5 19:34:29 2018 +0200 gnu: r-xts: Update to 0.11-0. * gnu/packages/cran.scm (r-xts): Update to 0.11-0. [native-inputs]: Remove. ---

88/103: gnu: r-graph: Move from bioinformatics to bioconductor.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2 Author: Ricardo Wurmus Date: Wed Sep 5 19:46:12 2018 +0200 gnu: r-graph: Move from bioinformatics to bioconductor. * gnu/packages/bioinformatics.scm (r-graph): Move from her

83/103: gnu: r-fnn: Update to 1.1.2.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 7a96c4e0a00e0c527862df289aa48cab231380dc Author: Ricardo Wurmus Date: Wed Sep 5 19:39:09 2018 +0200 gnu: r-fnn: Update to 1.1.2.1. * gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1. --- gnu/packages/cran.scm | 4

91/103: gnu: r-kernlab: Update to 0.9-27.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c28d8d8db06e165faa168a8e197651d941bbb9ee Author: Ricardo Wurmus Date: Wed Sep 5 19:50:14 2018 +0200 gnu: r-kernlab: Update to 0.9-27. * gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27. --- gnu/pack

60/103: Revert "gnu: ghc-tasty: Update to 1.1.0.3."

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit f9f4578ba0c4b5b22cdac86e8183dc542d66cc85 Author: Ricardo Wurmus Date: Wed Sep 5 18:43:11 2018 +0200 Revert "gnu: ghc-tasty: Update to 1.1.0.3." This reverts commit 3ad6b8909025a8f4d3e1f1f5ea16bcd0cace557c. --- gnu

69/103: gnu: r-ipred: Update to 0.9-7.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2d2b95d15141f55f747b785ca0094aeaf3001268 Author: Ricardo Wurmus Date: Wed Sep 5 19:26:33 2018 +0200 gnu: r-ipred: Update to 0.9-7. * gnu/packages/cran.scm (r-ipred): Update to 0.9-7. --- gnu/packages/cran.scm | 4

56/103: gnu: Add r-sjmisc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 1f560b9cdb820569e796caa9949557d9a18f8549 Author: Ricardo Wurmus Date: Wed Sep 5 15:14:33 2018 +0200 gnu: Add r-sjmisc. * gnu/packages/cran.scm (r-sjmisc): New variable. --- gnu/packages/cran.scm | 37 +

78/103: gnu: r-tinytex: Update to 0.8.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit d97d98e142e40820807b050c656df40a33e8d020 Author: Ricardo Wurmus Date: Wed Sep 5 19:35:24 2018 +0200 gnu: r-tinytex: Update to 0.8. * gnu/packages/cran.scm (r-tinytex): Update to 0.8. --- gnu/packages/cran.scm | 4

68/103: gnu: r-pls: Update to 2.7-0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c73752cac5e74691d9f28c3c8c29a2fbb8291f4c Author: Ricardo Wurmus Date: Wed Sep 5 19:26:18 2018 +0200 gnu: r-pls: Update to 2.7-0. * gnu/packages/cran.scm (r-pls): Update to 2.7-0. --- gnu/packages/cran.scm | 4 ++--

65/103: gnu: r-reprex: Update to 0.2.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e3c1e93e35f25fc746476226e3c7b8c633eb2b8e Author: Ricardo Wurmus Date: Wed Sep 5 19:25:04 2018 +0200 gnu: r-reprex: Update to 0.2.0. * gnu/packages/cran.scm (r-reprex): Update to 0.2.0. [propagated-inputs]: Add

58/103: gnu: Add r-moonbook.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 0fd7d59dc387eea437482f7584d03c5a20399faa Author: Ricardo Wurmus Date: Wed Sep 5 15:14:56 2018 +0200 gnu: Add r-moonbook. * gnu/packages/cran.scm (r-moonbook): New variable. --- gnu/packages/cran.scm | 29 +

48/103: gnu: r-r-rsp: Update to 0.43.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e2a2c3378ecba09fc94ad2114c3e21df3460050e Author: Ricardo Wurmus Date: Wed Sep 5 15:00:00 2018 +0200 gnu: r-r-rsp: Update to 0.43.0. * gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.0. --- gnu/packages/stati

75/103: gnu: r-mice: Update to 3.3.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 1b3b2a72eeaa5a134e0db8928f43e42340df36f6 Author: Ricardo Wurmus Date: Wed Sep 5 19:33:48 2018 +0200 gnu: r-mice: Update to 3.3.0. * gnu/packages/cran.scm (r-mice): Update to 3.3.0. --- gnu/packages/cran.scm | 4 ++

74/103: gnu: r-pan: Update to 1.6.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit a7265593d3385423adc2dbeaeb4827db586b2e34 Author: Ricardo Wurmus Date: Wed Sep 5 19:33:37 2018 +0200 gnu: r-pan: Update to 1.6. * gnu/packages/cran.scm (r-pan): Update to 1.6. --- gnu/packages/cran.scm | 4 ++-- 1

55/103: gnu: Add r-sjlabelled.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit cfc06314334933f0045e1851449722a612e28f5b Author: Ricardo Wurmus Date: Wed Sep 5 15:14:17 2018 +0200 gnu: Add r-sjlabelled. * gnu/packages/cran.scm (r-sjlabelled): New variable. --- gnu/packages/cran.scm | 33 +

73/103: gnu: r-jomo: Update to 2.6-4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e7630cc93182f38b486c1c6825bf7a9ca5c3a6b0 Author: Ricardo Wurmus Date: Wed Sep 5 19:27:42 2018 +0200 gnu: r-jomo: Update to 2.6-4. * gnu/packages/cran.scm (r-jomo): Update to 2.6-4. [propagated-inputs]: Add r-or

94/103: gnu: r-ztable: Update to 0.2.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e5db6890adb1b842d4ad5dc3313a65f6628ec3bf Author: Ricardo Wurmus Date: Wed Sep 5 19:51:15 2018 +0200 gnu: r-ztable: Update to 0.2.0. * gnu/packages/statistics.scm (r-ztable): Update to 0.2.0. [propagated-inputs]

45/103: gnu: r-xml: Update to 3.98-1.16.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2aafa73a94daa2ea0399ba0873b87fdfb9d03ff0 Author: Ricardo Wurmus Date: Wed Sep 5 14:59:01 2018 +0200 gnu: r-xml: Update to 3.98-1.16. * gnu/packages/statistics.scm (r-xml): Update to 3.98-1.16. --- gnu/packages/sta

50/103: gnu: r-plotly: Update to 4.8.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 88cb7aa9e7d18db3c7266424f6efc356a575c0f1 Author: Ricardo Wurmus Date: Wed Sep 5 15:00:41 2018 +0200 gnu: r-plotly: Update to 4.8.0. * gnu/packages/statistics.scm (r-plotly): Update to 4.8.0. [propagated-inputs]

53/103: gnu: Add r-snakecase.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit bfee9ce88f3c6bd49a1dfc003128d1cb3b7aa421 Author: Ricardo Wurmus Date: Wed Sep 5 15:12:47 2018 +0200 gnu: Add r-snakecase. * gnu/packages/cran.scm (r-snakecase): New variable. --- gnu/packages/cran.scm | 22 +++

64/103: gnu: r-reticulate: Update to 1.10.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2cdd9d4f832bf11d9b419e15fdfcdcf49ec99520 Author: Ricardo Wurmus Date: Wed Sep 5 19:24:41 2018 +0200 gnu: r-reticulate: Update to 1.10. * gnu/packages/cran.scm (r-reticulate): Update to 1.10. --- gnu/packages/cran.

93/103: gnu: r-zoo: Update to 1.8-3.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit f0519c8faec872b599debde5f2f91d6dbf57a5b4 Author: Ricardo Wurmus Date: Wed Sep 5 19:50:59 2018 +0200 gnu: r-zoo: Update to 1.8-3. * gnu/packages/statistics.scm (r-zoo): Update to 1.8-3. --- gnu/packages/statistics.

36/103: gnu: r-scales: Update to 1.0.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 3bf390279d9fce490fcfbab21330a0009a4d178c Author: Ricardo Wurmus Date: Wed Sep 5 14:52:53 2018 +0200 gnu: r-scales: Update to 1.0.0. * gnu/packages/statistics.scm (r-scales): Update to 1.0.0. [propagated-inputs]

77/103: gnu: r-pillar: Update to 1.3.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 6f5b157e3dab1ee7db0e62552ba6350b91c66d1e Author: Ricardo Wurmus Date: Wed Sep 5 19:34:57 2018 +0200 gnu: r-pillar: Update to 1.3.0. * gnu/packages/cran.scm (r-pillar): Update to 1.3.0. [propagated-inputs]: Add

81/103: gnu: r-tsa: Update to 1.2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 1fe9919a575b5d2d97dc7dee65251a2689709ed4 Author: Ricardo Wurmus Date: Wed Sep 5 19:36:31 2018 +0200 gnu: r-tsa: Update to 1.2. * gnu/packages/cran.scm (r-tsa): Update to 1.2. [propagated-inputs]: Remove r-tseri

80/103: gnu: r-statnet-common: Update to 4.1.4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit be5642eb69d3b0dba1685742291b5d635f004c66 Author: Ricardo Wurmus Date: Wed Sep 5 19:36:12 2018 +0200 gnu: r-statnet-common: Update to 4.1.4. * gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4. --- gnu/pack

66/103: gnu: r-callr: Update to 3.0.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit b72de5b3f674e3b360f1d7c5032d9fb47e0992d7 Author: Ricardo Wurmus Date: Wed Sep 5 19:25:42 2018 +0200 gnu: r-callr: Update to 3.0.0. * gnu/packages/cran.scm (r-callr): Update to 3.0.0. [propagated-inputs]: Add r-

97/103: gnu: r-robustbase: Update to 0.93-2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 0d279d607aeccc2365a4502db4c58ec247724bb4 Author: Ricardo Wurmus Date: Wed Sep 5 19:53:34 2018 +0200 gnu: r-robustbase: Update to 0.93-2. * gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2. --- gnu/pack

61/103: gnu: r-rmarkdown: Use latest version of Pandoc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 78f2c08c0b780dd2fe72548b901df7eb887da7f1 Author: Ricardo Wurmus Date: Wed Sep 5 19:22:20 2018 +0200 gnu: r-rmarkdown: Use latest version of Pandoc. * gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Re

99/103: gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit dff5640a59da533fc91fa285b6d7d7fec2f7e60a Author: Ricardo Wurmus Date: Wed Sep 5 19:55:00 2018 +0200 gnu: r-rcas: Use standard version of ghc-pandoc-citeproc. * gnu/packages/bioinformatics.scm (r-rcas)[native-inputs

57/103: gnu: Add r-nortest.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit aaed237d1bcae69bd3c65f06633a8a4c88f2e382 Author: Ricardo Wurmus Date: Wed Sep 5 15:14:45 2018 +0200 gnu: Add r-nortest. * gnu/packages/cran.scm (r-nortest): New variable. --- gnu/packages/cran.scm | 19 +++

59/103: Revert "gnu: ghc-base-compat: Update to 0.10.4."

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 90708323a13c94bf36a56735da9c21a2203e9fde Author: Ricardo Wurmus Date: Wed Sep 5 18:39:43 2018 +0200 Revert "gnu: ghc-base-compat: Update to 0.10.4." This reverts commit 0fa2c552fcd5176b0484b77b7f7c94d82d46415e.

72/103: gnu: Add r-ordinal.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit b8f6e2f82a733759017269170e7b8813f04a9425 Author: Ricardo Wurmus Date: Wed Sep 5 19:32:50 2018 +0200 gnu: Add r-ordinal. * gnu/packages/cran.scm (r-ordinal): New variable. --- gnu/packages/cran.scm | 27 +++

71/103: gnu: Add r-ucminf.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit dc66835226858236c12c498cc9de0e98c8c86e18 Author: Ricardo Wurmus Date: Wed Sep 5 19:32:40 2018 +0200 gnu: Add r-ucminf. * gnu/packages/cran.scm (r-ucminf): New variable. --- gnu/packages/cran.scm | 24 +

89/103: gnu: r-codedepends: Move from cran to bioconductor.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit a207bca2adf5371aabe41f28203c0e3e7bfbacad Author: Ricardo Wurmus Date: Wed Sep 5 19:47:19 2018 +0200 gnu: r-codedepends: Move from cran to bioconductor. * gnu/packages/cran.scm (r-codedepends): Move from here...

33/103: gnu: Add r-pkgbuild.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 4f8247b54b4bb95fc58b3c4f0c30d635909496e2 Author: Ricardo Wurmus Date: Wed Sep 5 14:46:33 2018 +0200 gnu: Add r-pkgbuild. * gnu/packages/cran.scm (r-pkgbuild): New variable. --- gnu/packages/cran.scm | 27 +

52/103: gnu: Add r-officer.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c183fa26881d363c2c078dad534c9098e05456cd Author: Ricardo Wurmus Date: Wed Sep 5 15:12:31 2018 +0200 gnu: Add r-officer. * gnu/packages/cran.scm (r-officer): New variable. --- gnu/packages/cran.scm | 35 +++

25/103: gnu: r-edaseq: Update to 2.14.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 3c553046888943842d953012759aacde255c4e0c Author: Ricardo Wurmus Date: Wed Sep 5 14:27:26 2018 +0200 gnu: r-edaseq: Update to 2.14.1. * gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.1. --- gnu/packages

84/103: gnu: r-maptools: Update to 0.9-3.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 12132229b0c9c57b1f99db158e02a81922a1aabf Author: Ricardo Wurmus Date: Wed Sep 5 19:39:23 2018 +0200 gnu: r-maptools: Update to 0.9-3. * gnu/packages/cran.scm (r-maptools): Update to 0.9-3. --- gnu/packages/cran.sc

30/103: gnu: r-scater: Update to 1.8.4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 8e44ff0c0de2ee752ccaf9189d882735d3185c65 Author: Ricardo Wurmus Date: Wed Sep 5 14:37:02 2018 +0200 gnu: r-scater: Update to 1.8.4. * gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.4. --- gnu/packages/b

38/103: gnu: r-yaml: Update to 2.2.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 3299bc1c5e43a146ba1ea380fc905b2c096f9174 Author: Ricardo Wurmus Date: Wed Sep 5 14:53:49 2018 +0200 gnu: r-yaml: Update to 2.2.0. * gnu/packages/statistics.scm (r-yaml): Update to 2.2.0. --- gnu/packages/statistic

86/103: gnu: r-codedepends: Update to 0.6.5.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit a9b02ddd73adf938d5ef68658c2873dac64b7f04 Author: Ricardo Wurmus Date: Wed Sep 5 19:39:58 2018 +0200 gnu: r-codedepends: Update to 0.6.5. * gnu/packages/cran.scm (r-codedepends): Update to 0.6.5. [propagated-inp

79/103: gnu: r-metap: Update to 1.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e32368c130893da22b35b4318f06606baacd5056 Author: Ricardo Wurmus Date: Wed Sep 5 19:35:46 2018 +0200 gnu: r-metap: Update to 1.0. * gnu/packages/cran.scm (r-metap): Update to 1.0. [propagated-inputs]: Add r-rdpa

87/103: gnu: r-ggpubr: Update to 0.1.8.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit caaec8865117a15392a5220fe29f0acacef1a318 Author: Ricardo Wurmus Date: Wed Sep 5 19:40:20 2018 +0200 gnu: r-ggpubr: Update to 0.1.8. * gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8. [propagated-inputs]: Add

44/103: gnu: r-rcpparmadillo: Update to 0.9.100.5.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 41f6685388da9e2258ababbdb5e16be56993e949 Author: Ricardo Wurmus Date: Wed Sep 5 14:58:39 2018 +0200 gnu: r-rcpparmadillo: Update to 0.9.100.5.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.100.5.

70/103: gnu: r-broom: Update to 0.5.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 45c156bf812e227b07e94b0420d41ed57ae10220 Author: Ricardo Wurmus Date: Wed Sep 5 19:26:58 2018 +0200 gnu: r-broom: Update to 0.5.0. * gnu/packages/cran.scm (r-broom): Update to 0.5.0. [propagated-inputs]: Add r-

54/103: gnu: Add r-prediction.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit de059e4bd3dce2937a4ac7853731f7f65e950475 Author: Ricardo Wurmus Date: Wed Sep 5 15:12:57 2018 +0200 gnu: Add r-prediction. * gnu/packages/cran.scm (r-prediction): New variable. --- gnu/packages/cran.scm | 24 +

51/103: gnu: r-googlesheets: Update to 0.3.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 5dbe7aa92026ef7143d36036570e7e027ab85b64 Author: Ricardo Wurmus Date: Wed Sep 5 15:01:09 2018 +0200 gnu: r-googlesheets: Update to 0.3.0. * gnu/packages/statistics.scm (r-googlesheets): Update to 0.3.0. [propag

90/103: gnu: r-adaptivesparsity: Update to 1.6.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c0608f815c4706ede4e7533409f3e7da127b767f Author: Ricardo Wurmus Date: Wed Sep 5 19:49:33 2018 +0200 gnu: r-adaptivesparsity: Update to 1.6. * gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.

35/103: gnu: r-stringi: Update to 1.2.4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 97c81cc174b31fe898263cf4e802e00e95f76ef3 Author: Ricardo Wurmus Date: Wed Sep 5 14:52:33 2018 +0200 gnu: r-stringi: Update to 1.2.4. * gnu/packages/statistics.scm (r-stringi): Update to 1.2.4. --- gnu/packages/sta

43/103: gnu: r-git2r: Update to 0.23.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 19cb93be55e4cffab4b48542835d9b18ef74d949 Author: Ricardo Wurmus Date: Wed Sep 5 14:58:00 2018 +0200 gnu: r-git2r: Update to 0.23.0. * gnu/packages/statistics.scm (r-git2r): Update to 0.23.0. [native-inputs]: Ad

67/103: gnu: r-glue: Update to 1.3.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit b00e8ae77105d8fe398f5b9d47812844aa21b5dd Author: Ricardo Wurmus Date: Wed Sep 5 19:26:04 2018 +0200 gnu: r-glue: Update to 1.3.0. * gnu/packages/cran.scm (r-glue): Update to 1.3.0. --- gnu/packages/cran.scm | 4 ++

82/103: gnu: r-heatmaply: Update to 0.15.2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 19950821d74e5ae008919f28511bb8caa8c516ce Author: Ricardo Wurmus Date: Wed Sep 5 19:37:05 2018 +0200 gnu: r-heatmaply: Update to 0.15.2. * gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2. --- gnu/packages/cra

62/103: gnu: Add r-flextable.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 589bd1c4260a429536d3a69a4b7c0a7bcd2e4357 Author: Ricardo Wurmus Date: Wed Sep 5 19:23:51 2018 +0200 gnu: Add r-flextable. * gnu/packages/cran.scm (r-flextable): New variable. --- gnu/packages/cran.scm | 31 +++

40/103: gnu: r-xtable: Update to 1.8-3.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 7f38b31ecbeab97f3efdc633504c4caa1a3a0621 Author: Ricardo Wurmus Date: Wed Sep 5 14:54:19 2018 +0200 gnu: r-xtable: Update to 1.8-3. * gnu/packages/statistics.scm (r-xtable): Update to 1.8-3. --- gnu/packages/stati

20/103: gnu: r-maldiquant: Update to 1.18.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 4ee8c37cca305dd7c581a7bf0fcf82fa351104a8 Author: Ricardo Wurmus Date: Wed Sep 5 14:00:56 2018 +0200 gnu: r-maldiquant: Update to 1.18. * gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.18. --- gnu/pack

37/103: gnu: r-evaluate: Update to 0.11.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2a96a093ec9a812bf7ccb6e095b3377df81d75aa Author: Ricardo Wurmus Date: Wed Sep 5 14:53:36 2018 +0200 gnu: r-evaluate: Update to 0.11. * gnu/packages/statistics.scm (r-evaluate): Update to 0.11. --- gnu/packages/sta

63/103: gnu: r-doby: Update to 4.6-2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit cb96d81be47ac5e553dc7b14ce64823a9b6f99a5 Author: Ricardo Wurmus Date: Wed Sep 5 19:24:12 2018 +0200 gnu: r-doby: Update to 4.6-2. * gnu/packages/cran.scm (r-doby): Update to 4.6-2. --- gnu/packages/cran.scm | 4 ++

12/103: gnu: r-limma: Update to 3.36.3.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 688cb0852706d1e2d0cc03c707a04098ab59b98b Author: Ricardo Wurmus Date: Wed Sep 5 13:52:03 2018 +0200 gnu: r-limma: Update to 3.36.3. * gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.3. --- gnu/packages/b

04/103: gnu: Add r-rdpack.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 6a8469755cd63a2fd9deb617962bff22f8542485 Author: Ricardo Wurmus Date: Wed Sep 5 13:38:51 2018 +0200 gnu: Add r-rdpack. * gnu/packages/cran.scm (r-rdpack): New variable. --- gnu/packages/cran.scm | 27 +

06/103: gnu: r-chippeakanno: Update to 3.14.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 65050163e01d40d197f57748dc82072026676445 Author: Ricardo Wurmus Date: Wed Sep 5 13:42:00 2018 +0200 gnu: r-chippeakanno: Update to 3.14.1. * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.1. --- gn

11/103: gnu: r-variantannotation: Update to 1.26.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 33a103a54393f4e8994b2cb46f6be7d8942cc42e Author: Ricardo Wurmus Date: Wed Sep 5 13:51:48 2018 +0200 gnu: r-variantannotation: Update to 1.26.1. * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.2

42/103: gnu: r-roxygen2: Update to 6.1.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 2848c52c5ec537e9d4ee23bedd6658c610ff02fd Author: Ricardo Wurmus Date: Wed Sep 5 14:54:52 2018 +0200 gnu: r-roxygen2: Update to 6.1.0. * gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.0. [propagated-inp

01/103: gnu: Add r-fansi.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 356230da4a77eef1345e4b2079db7020df98cdc6 Author: Ricardo Wurmus Date: Wed Sep 5 12:26:56 2018 +0200 gnu: Add r-fansi. * gnu/packages/cran.scm (r-fansi): New variable. --- gnu/packages/cran.scm | 21 +++

46/103: gnu: r-e1071: Update to 1.7-0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e926159eb3fd006c6c688729e03043741a456bf9 Author: Ricardo Wurmus Date: Wed Sep 5 14:59:24 2018 +0200 gnu: r-e1071: Update to 1.7-0. * gnu/packages/statistics.scm (r-e1071): Update to 1.7-0. --- gnu/packages/statist

18/103: gnu: r-genomicfeatures: Update to 1.32.2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit ad2ed8d01fa3a5486072f0f484beb74129928796 Author: Ricardo Wurmus Date: Wed Sep 5 13:59:44 2018 +0200 gnu: r-genomicfeatures: Update to 1.32.2. * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.2.

22/103: gnu: r-seurat: Update to 2.3.4.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 6f6aef80e3def1ffa7c8e4b0f75b22bd2ececc74 Author: Ricardo Wurmus Date: Wed Sep 5 14:20:56 2018 +0200 gnu: r-seurat: Update to 2.3.4. * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.4. [source]: Remov

05/103: gnu: Add r-clipr.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 88e4ed55d68ffeaf67e5dad128f0e762e5814d26 Author: Ricardo Wurmus Date: Wed Sep 5 13:41:11 2018 +0200 gnu: Add r-clipr. * gnu/packages/cran.scm (r-clipr): New variable. --- gnu/packages/cran.scm | 19 +++

32/103: gnu: r-httpuv: Update to 1.4.5.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 1ec1989f8007d0b90cc3b5ac379bb2f7133e299f Author: Ricardo Wurmus Date: Wed Sep 5 14:42:01 2018 +0200 gnu: r-httpuv: Update to 1.4.5. * gnu/packages/web.scm (r-httpuv): Update to 1.4.5. [native-inputs]: Add pkg-c

47/103: gnu: r-r-utils: Update to 2.7.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit eefa7c7f3dc48a144e39d9167d3befa74f4f8645 Author: Ricardo Wurmus Date: Wed Sep 5 14:59:45 2018 +0200 gnu: r-r-utils: Update to 2.7.0. * gnu/packages/statistics.scm (r-r-utils): Update to 2.7.0. --- gnu/packages/sta

27/103: gnu: r-biovizbase: Update to 1.28.2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 70daf9362b328079886ed7854e6afe4d96181323 Author: Ricardo Wurmus Date: Wed Sep 5 14:30:16 2018 +0200 gnu: r-biovizbase: Update to 1.28.2. * gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.2. [prop

14/103: gnu: r-biocparallel: Update to 1.14.2.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit a02340058c15a22cf8c942c96d0053b8e0881452 Author: Ricardo Wurmus Date: Wed Sep 5 13:58:33 2018 +0200 gnu: r-biocparallel: Update to 1.14.2. * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.2. ---

26/103: gnu: r-keggrest: Update to 1.20.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit ff7c7d62f464d0a8d5e91ef058579ad03247d817 Author: Ricardo Wurmus Date: Wed Sep 5 14:29:51 2018 +0200 gnu: r-keggrest: Update to 1.20.1. * gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.1. --- gnu/pack

16/103: gnu: r-delayedarray: Update to 0.6.5.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit aea1b6fb8a9b48b35139e146faffaf27463091b8 Author: Ricardo Wurmus Date: Wed Sep 5 13:59:06 2018 +0200 gnu: r-delayedarray: Update to 0.6.5. * gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.5. --- gn

09/103: gnu: r-iranges: Update to 2.14.11.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 5728d9c6c081b7a0eeb6d29ec221d4638f6dd083 Author: Ricardo Wurmus Date: Wed Sep 5 13:46:20 2018 +0200 gnu: r-iranges: Update to 2.14.11. * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.11. --- gnu/pack

41/103: gnu: r-ade4: Update to 1.7-13.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 9b7e8df85bc8f06a662f0a9631231bd56939cfb2 Author: Ricardo Wurmus Date: Wed Sep 5 14:54:35 2018 +0200 gnu: r-ade4: Update to 1.7-13. * gnu/packages/statistics.scm (r-ade4): Update to 1.7-13. --- gnu/packages/statist

34/103: gnu: Add r-pkgload.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit e362be8e899707fa85e7ae3102cbb5013d51bb69 Author: Ricardo Wurmus Date: Wed Sep 5 14:46:49 2018 +0200 gnu: Add r-pkgload. * gnu/packages/cran.scm (r-pkgload): New variable. --- gnu/packages/cran.scm | 27 +++

19/103: gnu: r-seqminer: Update to 6.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 48b21f8b6b7fcd6d0857fc1ac75dddb52bbabdf4 Author: Ricardo Wurmus Date: Wed Sep 5 14:00:00 2018 +0200 gnu: r-seqminer: Update to 6.1. * gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.1. --- gnu/packages/b

28/103: gnu: r-ggbio: Update to 1.28.5.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 16527f1cbc8af73b1034ddce2edf9e2bce094564 Author: Ricardo Wurmus Date: Wed Sep 5 14:31:06 2018 +0200 gnu: r-ggbio: Update to 1.28.5. * gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.5. [propagated-inp

23/103: gnu: r-diffusionmap: Update to 1.1-0.1.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit c273bcdfce1f1cac53990e6c26455fb6a749763f Author: Ricardo Wurmus Date: Wed Sep 5 14:22:33 2018 +0200 gnu: r-diffusionmap: Update to 1.1-0.1. * gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1. --- gnu/pac

13/103: gnu: r-genomicranges: Update to 1.32.6.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 1d56c79f86cd0c776e76a1bece26622f56c28f12 Author: Ricardo Wurmus Date: Wed Sep 5 13:52:53 2018 +0200 gnu: r-genomicranges: Update to 1.32.6. * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.6. ---

49/103: gnu: r-matrixstats: Update to 0.54.0.

2018-09-05 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 195eec737c13a871c39f9ebfeb3641a5e7b9d583 Author: Ricardo Wurmus Date: Wed Sep 5 15:00:16 2018 +0200 gnu: r-matrixstats: Update to 0.54.0. * gnu/packages/statistics.scm (r-matrixstats): Update to 0.54.0. --- gnu/pa

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