01/01: gnu: hmmer: Update to 3.2.1.

2018-09-21 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 05fb1e0017030f1c0cbc7e9a1adeccca57ef1d9d Author: Ben Woodcroft Date: Sat Sep 22 08:19:09 2018 +1000 gnu: hmmer: Update to 3.2.1. * gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1. [origin]: Remov

branch master updated (78b7b9d -> 05fb1e0)

2018-09-21 Thread Ben Woodcroft
benwoodcroft pushed a change to branch master in repository guix. from 78b7b9d gnu: snap: Update to 4.2.1.4. new 05fb1e0 gnu: hmmer: Update to 3.2.1. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisio

branch master updated (a255142 -> 78b7b9d)

2018-09-21 Thread Nicolas Goaziou
ngz pushed a change to branch master in repository guix. from a255142 gnu: emacs-org: Update to 9.1.14. new 78b7b9d gnu: snap: Update to 4.2.1.4. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions l

01/01: gnu: snap: Update to 4.2.1.4.

2018-09-21 Thread Nicolas Goaziou
ngz pushed a commit to branch master in repository guix. commit 78b7b9dbe9098c9c47c7acba363223bb6c5bb1c8 Author: Nicolas Goaziou Date: Fri Sep 21 22:22:09 2018 +0200 gnu: snap: Update to 4.2.1.4. * gnu/packages/education.scm (snap): Update to 4.2.1.4. --- gnu/packages/education.s

01/01: gnu: emacs-org: Update to 9.1.14.

2018-09-21 Thread Nicolas Goaziou
ngz pushed a commit to branch master in repository guix. commit a255142af3288ff76e37ac30b6b6f9acdcd2ca01 Author: Nicolas Goaziou Date: Fri Sep 21 21:55:28 2018 +0200 gnu: emacs-org: Update to 9.1.14. * gnu/packages/emacs.scm (emacs-org): Update to 9.1.14. --- gnu/packages/emacs.s

branch master updated (1302837 -> a255142)

2018-09-21 Thread Nicolas Goaziou
ngz pushed a change to branch master in repository guix. from 1302837 gnu: workrave: Update to 1.10.21. new a255142 gnu: emacs-org: Update to 9.1.14. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisio

02/05: gnu: wxwidgets: Update to 3.0.4.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 9a32bdf8a9b56eec84310a809820eadd1a33f45f Author: Tobias Geerinckx-Rice Date: Fri Sep 21 17:12:36 2018 +0200 gnu: wxwidgets: Update to 3.0.4. * gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4. --- gnu/package

05/05: gnu: workrave: Update to 1.10.21.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 1302837f6b9ba4364ed06cdbe55fb54e8fe7de0f Author: Tobias Geerinckx-Rice Date: Fri Sep 21 20:22:51 2018 +0200 gnu: workrave: Update to 1.10.21. * gnu/packages/gnome.scm (workrave): Update to 1.10.21. [source]: Use

03/05: gnu: filezilla: Update to 3.37.1.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 10fadd1e3d2e67ed8bc34a91a587d4862f6055e5 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 17:13:13 2018 +0200 gnu: filezilla: Update to 3.37.1. * gnu/packages/ftp.scm (filezilla): Update to 3.37.1. --- gnu/packages/ft

01/05: gnu: python-pyparsing: Update to 2.2.1.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 199d72e32759b0b0a0514d1bb667f0f1f2a6cbb4 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 14:26:30 2018 +0200 gnu: python-pyparsing: Update to 2.2.1. * gnu/packages/python.scm (python-pyparsing): Update to 2.2.1. [

branch master updated (ec944a1 -> 1302837)

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a change to branch master in repository guix. from ec944a1 gnu: rust: Remove unused "ar" setting. new 199d72e gnu: python-pyparsing: Update to 2.2.1. new 9a32bdf gnu: wxwidgets: Update to 3.0.4. new 10fadd1 gnu: filezilla: Update to 3.37.1.

04/05: gnu: emacs-password-store: Update to 1.7.3.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 43726c522f4b3802ce66c0f17160314569b1d673 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 20:13:14 2018 +0200 gnu: emacs-password-store: Update to 1.7.3. * gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3

branch master updated (92a9f14 -> ec944a1)

2018-09-21 Thread Danny Milosavljevic
dannym pushed a change to branch master in repository guix. from 92a9f14 doc: Add section about inferiors. new ec944a1 gnu: rust: Remove unused "ar" setting. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: rust: Remove unused "ar" setting.

2018-09-21 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit ec944a1de97c8a523d6e1089b8c4430424297f93 Author: Danny Milosavljevic Date: Fri Sep 21 15:42:56 2018 +0200 gnu: rust: Remove unused "ar" setting. * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]:

branch master updated (10e066f -> 92a9f14)

2018-09-21 Thread Ludovic Court�
civodul pushed a change to branch master in repository guix. from 10e066f gnu: rust: Remove unused "localstatedir" setting. new b0d1e60 gnu: hdf5: Allow for absence of utility script. new 45201bf gnu: hdf5-parallel-openmpi: Really enable parallel build. new 7e2

02/12: gnu: hdf5-parallel-openmpi: Really enable parallel build.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 45201bf245856954cb8368c328e54773a0a81156 Author: Paul Garlick Date: Thu Sep 20 18:59:57 2018 +0100 gnu: hdf5-parallel-openmpi: Really enable parallel build. This fix ensures that the H5_HAVE_PARALLEL identifier is

11/12: inferior: Add 'inferior-for-channels'.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 2dad0313753c4b506eb1f401136b6fcb4785a3b9 Author: Ludovic Courtès Date: Tue Sep 18 13:30:48 2018 +0200 inferior: Add 'inferior-for-channels'. * guix/inferior.scm (%inferior-cache-directory): New variable. (inf

05/12: inferior: Add 'lookup-inferior-packages'.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit e1a4ffdab52f616f41de4ff783a712bcd50a5187 Author: Ludovic Courtès Date: Sat Sep 15 14:50:14 2018 +0200 inferior: Add 'lookup-inferior-packages'. * guix/inferior.scm ()[packages, table]: New fields. (open-infer

09/12: profiles: 'packages->manifest' now accepts inferior packages.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 811b21fb15d36b06fde994ca7ef5916a9a19f250 Author: Ludovic Courtès Date: Tue Sep 18 10:21:28 2018 +0200 profiles: 'packages->manifest' now accepts inferior packages. * guix/profiles.scm (packages->manifest)[inferio

12/12: doc: Add section about inferiors.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 92a9f14b9d2ae08f5d8f30149963c1e326dd37a6 Author: Ludovic Courtès Date: Fri Sep 21 17:03:52 2018 +0200 doc: Add section about inferiors. * doc/guix.texi (Inferiors): New node. (Channels): Add xref to "Inferior

06/12: inferior: Add 'inferior-package-inputs' & co.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 6030396aec325b3c3287a472014bc2d530abb99d Author: Ludovic Courtès Date: Mon Sep 17 09:55:31 2018 +0200 inferior: Add 'inferior-package-inputs' & co. * guix/inferior.scm (open-inferior): Use (ice-9 match). (inf

04/12: inferior: Add 'inferior-package-derivation'.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 9daf046c5dd9256e45073dfd4647e12de10dcb3e Author: Ludovic Courtès Date: Fri Sep 14 17:30:06 2018 +0200 inferior: Add 'inferior-package-derivation'. * guix/inferior.scm (read-inferior-response) (send-inferior-r

10/12: channels: Add 'channel-instances->derivation'.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit c37f38bde69c072cfd0006ba89f30f0d0ad24448 Author: Ludovic Courtès Date: Tue Sep 18 12:08:05 2018 +0200 channels: Add 'channel-instances->derivation'. * guix/channels.scm (channel-instances->derivation): New proced

03/12: gnu: Add r-pore.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 7e27393f82ff5e7237f870ded09652b89e457faa Author: pimi Date: Tue Sep 11 16:54:32 2018 +0200 gnu: Add r-pore. * gnu/packages/bioinformatics.scm (r-pore): New variable. Signed-off-by: Ludovic Courtès ---

08/12: inferior: Add 'inferior-package->manifest-entry'.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit 2e6d64e122ad2745154a38122785895d1b66c2ff Author: Ludovic Courtès Date: Tue Sep 18 09:56:34 2018 +0200 inferior: Add 'inferior-package->manifest-entry'. * guix/inferior.scm (inferior-package->manifest-entry): New

07/12: inferior: Add 'inferior-package-search-paths' & co.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit eee8b303f6d82c1400fd8fd3b097406358ed7875 Author: Ludovic Courtès Date: Mon Sep 17 10:04:15 2018 +0200 inferior: Add 'inferior-package-search-paths' & co. * guix/inferior.scm (%inferior-package-search-paths) (

01/12: gnu: hdf5: Allow for absence of utility script.

2018-09-21 Thread Ludovic Court�
civodul pushed a commit to branch master in repository guix. commit b0d1e60fff023e405c92c45b3c78538c3cbb7e6b Author: Paul Garlick Date: Thu Sep 20 18:59:56 2018 +0100 gnu: hdf5: Allow for absence of utility script. * gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'spli

01/01: gnu: rust: Remove unused "localstatedir" setting.

2018-09-21 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit 10e066f410d1ffb9505f4fd0b5cc73e8af2154b0 Author: Danny Milosavljevic Date: Fri Sep 21 15:21:24 2018 +0200 gnu: rust: Remove unused "localstatedir" setting. * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[c

branch master updated (118a084 -> 10e066f)

2018-09-21 Thread Danny Milosavljevic
dannym pushed a change to branch master in repository guix. from 118a084 gnu: libfilezilla: Update to 0.13.2. new 10e066f gnu: rust: Remove unused "localstatedir" setting. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separat

05/05: gnu: libfilezilla: Update to 0.13.2.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 118a084531a546ccad0762b5ac7d564619183d6b Author: Tobias Geerinckx-Rice Date: Fri Sep 21 14:55:20 2018 +0200 gnu: libfilezilla: Update to 0.13.2. * gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2. [source]:

branch master updated (e67ad55 -> 118a084)

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a change to branch master in repository guix. from e67ad55 gnu: icecat: Update to 60.2.0-gnu1 (pre-release). new 2aa137e gnu: crossguid: Use INVOKE. new 93ab9a5 gnu: kodi: Use INVOKE. new eacb5dc gnu: emacs-mu4e-conversation: Fix typo in descripti

01/05: gnu: crossguid: Use INVOKE.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 2aa137e261984b9762de5221459835eefb165fe7 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 13:29:38 2018 +0200 gnu: crossguid: Use INVOKE. * gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.

02/05: gnu: kodi: Use INVOKE.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 93ab9a5d76b8b84afd6823e2cdd1f62c9e6284f2 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 13:29:54 2018 +0200 gnu: kodi: Use INVOKE. * gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*. --- gnu/pa

03/05: gnu: emacs-mu4e-conversation: Fix typo in description.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit eacb5dc4871aadac965024aeab06f48362abba47 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 13:54:32 2018 +0200 gnu: emacs-mu4e-conversation: Fix typo in description. * gnu/packages/emacs.scm (emacs-mu4e-conversation)[de

04/05: gnu: python-pyparsing: Update home page.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 41e551b2d3ea24ffd96023d1b6c3648de3aac90d Author: Tobias Geerinckx-Rice Date: Fri Sep 21 14:00:53 2018 +0200 gnu: python-pyparsing: Update home page. * gnu/packages/python.scm (python-pyparsing)[home-page]: Update. --

02/02: gnu: icecat: Update to 60.2.0-gnu1 (pre-release).

2018-09-21 Thread Mark H. Weaver
mhw pushed a commit to branch master in repository guix. commit e67ad5532f76b53e955149da2f1e237696ff0893 Author: Mark H Weaver Date: Fri Sep 21 03:28:03 2018 -0400 gnu: icecat: Update to 60.2.0-gnu1 (pre-release). * gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1. [s

01/02: gnu: libvpx: Add upstream security fix.

2018-09-21 Thread Mark H. Weaver
mhw pushed a commit to branch master in repository guix. commit c5327efb97208df569b4682ef5bfe4ac825d1c4f Author: Mark H Weaver Date: Fri Sep 21 04:34:10 2018 -0400 gnu: libvpx: Add upstream security fix. * gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.

branch master updated (6569549 -> e67ad55)

2018-09-21 Thread Mark H. Weaver
mhw pushed a change to branch master in repository guix. from 6569549 gnu: python-paramiko: Update to 2.4.2 [security fixes]. new c5327ef gnu: libvpx: Add upstream security fix. new e67ad55 gnu: icecat: Update to 60.2.0-gnu1 (pre-release). The 2 revisions listed above

03/06: gnu: python-hdf4: Use INVOKE.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit e36058634d1754ab6d69f01a448efd691c2a1637 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 12:47:38 2018 +0200 gnu: python-hdf4: Use INVOKE. * gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE for

04/06: gnu: python-rencode: Update to 1.0.5.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit a1d6610e84f4ff61913e1e861093b38c2beb9614 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 12:58:02 2018 +0200 gnu: python-rencode: Update to 1.0.5. * gnu/packages/python.scm (python-rencode): Update to 1.0.5. [argu

05/06: gnu: python-paramiko: Use HTTPS home page.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 101ad242be256d6a5953187be56d61f89e1317d7 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 13:13:45 2018 +0200 gnu: python-paramiko: Use HTTPS home page. * gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Us

01/06: gnu: perl-xml-compile: Update to 1.60.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 174988fa05fbda4a9cdaab77d59fe4ea187b0e6b Author: Tobias Geerinckx-Rice Date: Fri Sep 21 12:18:55 2018 +0200 gnu: perl-xml-compile: Update to 1.60. * gnu/packages/xml.scm (perl-xml-compile): Update to 1.60. [propa

06/06: gnu: python-paramiko: Update to 2.4.2 [security fixes].

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 6569549dfa0c35e0f80869a630cd216d01c84590 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 13:15:55 2018 +0200 gnu: python-paramiko: Update to 2.4.2 [security fixes]. * gnu/packages/python-crypto.scm (python-paramiko):

branch master updated (1df40d3 -> 6569549)

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a change to branch master in repository guix. from 1df40d3 gnu: emacs-orgalist: Update to 1.9. new 174988f gnu: perl-xml-compile: Update to 1.60. new 6f05556 gnu: s6: Update to 2.7.2.1. new e360586 gnu: python-hdf4: Use INVOKE. new a1d6610

02/06: gnu: s6: Update to 2.7.2.1.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 6f05556ba77def387d862ee44d6658d8d647ad3c Author: Tobias Geerinckx-Rice Date: Fri Sep 21 12:21:38 2018 +0200 gnu: s6: Update to 2.7.2.1. * gnu/packages/skarnet.scm (s6): Update to 2.7.2.1. --- gnu/packages/skarnet.sc

branch master updated (3752b68 -> 1df40d3)

2018-09-21 Thread Nicolas Goaziou
ngz pushed a change to branch master in repository guix. from 3752b68 gnu: openscenegraph: Update to 3.6.3. new 1df40d3 gnu: emacs-orgalist: Update to 1.9. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The r

01/01: gnu: emacs-orgalist: Update to 1.9.

2018-09-21 Thread Nicolas Goaziou
ngz pushed a commit to branch master in repository guix. commit 1df40d3dbff82c2990271b406b32633fe216d143 Author: Nicolas Goaziou Date: Fri Sep 21 11:52:12 2018 +0200 gnu: emacs-orgalist: Update to 1.9. * gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9. --- gnu/packages/ema

03/05: Add 'GNU Guix' comment to all (gnu packages) headers.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 1779aaa09a576401e35bf4a0d1534ee546b5506e Author: Tobias Geerinckx-Rice Date: Fri Sep 21 08:19:42 2018 +0200 Add 'GNU Guix' comment to all (gnu packages) headers. * gnu/packages/debian.scm, gnu/packages/syndication.sc

01/05: gnu: perl-dbd-mysql: Update to 4.048.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit eeecbe09cc497b1ed9a2000283a5767903ba2fb4 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 08:07:25 2018 +0200 gnu: perl-dbd-mysql: Update to 4.048. * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048. --- g

04/05: gnu: python-pydot: Update to 1.2.4.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 29ddbc5607c8ad7bb0622e10716e60396817a42d Author: Tobias Geerinckx-Rice Date: Fri Sep 21 08:46:11 2018 +0200 gnu: python-pydot: Update to 1.2.4. * gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4. [argume

branch master updated (e0b07cc -> 3752b68)

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a change to branch master in repository guix. from e0b07cc gnu: rust: Work around mtime bug in rust build helpers. new eeecbe0 gnu: perl-dbd-mysql: Update to 4.048. new 4aa64e3 gnu: ubuntu-keyring: Update to 2018.09.18.1. new 1779aaa Add 'GNU Guix

05/05: gnu: openscenegraph: Update to 3.6.3.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 3752b683dc16e172f57f8397a542e562f564fc30 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 09:13:45 2018 +0200 gnu: openscenegraph: Update to 3.6.3. * gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3. [so

02/05: gnu: ubuntu-keyring: Update to 2018.09.18.1.

2018-09-21 Thread Tobias Geerinckx-Rice
nckx pushed a commit to branch master in repository guix. commit 4aa64e3a819ca53629b1cbe58c079eefa7dd24b0 Author: Tobias Geerinckx-Rice Date: Fri Sep 21 08:09:35 2018 +0200 gnu: ubuntu-keyring: Update to 2018.09.18.1. * gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.1