benwoodcroft pushed a commit to branch master
in repository guix.
commit 617c478506888daea35dceeda3679196eb8a5177
Author: Ben Woodcroft
Date: Sun Oct 21 22:31:56 2018 +1000
gnu: python2-dendropy: Disable failing test.
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments
benwoodcroft pushed a change to branch master
in repository guix.
from 21c8374 gnu: bowtie: Update to 2.3.4.3.
new 617c478 gnu: python2-dendropy: Disable failing test.
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benwoodcroft pushed a change to branch master
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from 5103c98 gnu: c-toxcore: Update to 0.2.8.
new 402561c gnu: python2-backports-functools-lru-cache: Update to 1.5.
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benwoodcroft pushed a commit to branch master
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commit 402561ccefd5367ec878461cc088b533993ba0b7
Author: Ben Woodcroft
Date: Thu Oct 4 15:48:04 2018 +1000
gnu: python2-backports-functools-lru-cache: Update to 1.5.
* gnu/packages/python.scm (python2-backports
benwoodcroft pushed a commit to branch master
in repository guix.
commit 05fb1e0017030f1c0cbc7e9a1adeccca57ef1d9d
Author: Ben Woodcroft
Date: Sat Sep 22 08:19:09 2018 +1000
gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin
benwoodcroft pushed a change to branch master
in repository guix.
from 78b7b9d gnu: snap: Update to 4.2.1.4.
new 05fb1e0 gnu: hmmer: Update to 3.2.1.
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from 10d5315 gnu: Add chroma.
new 5d5a02d gnu: Add python-fastalite.
new 19601e8 gnu: python2-psycopg2: Update to 2.7.5.
new 9e0c135 gnu: python-dendropy: Update to 4.4.0.
new 3f8c82e
benwoodcroft pushed a commit to branch master
in repository guix.
commit 19601e895b816afc033a155a9309037ec21fd3ed
Author: Ben Woodcroft
Date: Sun Jul 29 22:38:08 2018 +1000
gnu: python2-psycopg2: Update to 2.7.5.
* gnu/packages/bioinformatics.scm (python2-psycopg2): Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9e0c135c39b5f1fa2c5c9cd4a1e50ccee75cc31e
Author: Ben Woodcroft
Date: Sun Jul 29 22:44:37 2018 +1000
gnu: python-dendropy: Update to 4.4.0.
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5d5a02dd4c036d790c209bc235a5702488f3cc33
Author: Ben Woodcroft
Date: Sun Jul 29 21:57:51 2018 +1000
gnu: Add python-fastalite.
* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3f8c82e6d3094c41ff0ad841aa5f06959144da71
Author: Ben Woodcroft
Date: Sun Jul 29 22:48:32 2018 +1000
gnu: taxtastic: Add missing propagated-inputs.
* gnu/packages/bioinformatics.scm (taxtastic)[propagated
benwoodcroft pushed a change to branch master
in repository guix.
from daf823a gnu: services: Export virtlog-configuration.
new 5908818 gnu: python-h5py: Update to 2.8.0.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 5908818e309280b124b64f5320e4b98210093061
Author: Ben Woodcroft
Date: Sun Jul 15 00:43:57 2018 +1000
gnu: python-h5py: Update to 2.8.0.
* gnu/packages/python.scm (python-h5py): Update to 2.8.0.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from cbcdb77 gnu: diffoscope: Update to 94.
new 2c5289b gnu: diamond: Update to 0.9.22.
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commit 171cf56c2f404cf35b9848c57c7c5c2fea32c2b0
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Apr 27 19:04:49 2018 +1000
gnu: diamond: Update to 0.9.21.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 53ec1b7e8b649e78165dc9c6ea894cd70d20a33c
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Apr 27 19:06:02 2018 +1000
gnu: vsearch: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from a6334e6 gnu: emacs-websocket: Update to 1.10.
new 171cf56 gnu: diamond: Update to 0.9.21.
new 53ec1b7 gnu: vsearch: Update to 2.8.0.
The 2 revisions listed above as "new" are entirely new to this
benwoodcroft pushed a commit to branch master
in repository guix.
commit 8456a4c5cb66bb5be317af0669af41d55c97cbf9
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Mar 30 12:27:57 2018 +1000
gnu: ruby-2.2: Update to 2.2.10.
* gnu/packages/ruby.scm (ruby-2.2):
benwoodcroft pushed a commit to branch master
in repository guix.
commit c7a8aa131dc02b0020309b0bcc0c92d3811f8c8b
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Mar 17 12:17:09 2018 +1000
gnu: mafft: Update to 7.394.
* gnu/packages/bioinformatics.scm (mafft):
benwoodcroft pushed a change to branch master
in repository guix.
from 315ed91 gnu: pybitmessage: Update to 0.6.3.2 [security fixes].
new 9a40b8d gnu: diamond: Update to 0.9.19.
new c7a8aa1 gnu: mafft: Update to 7.394.
new f38ac74 gnu: mash: Update to 2.0.
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9a40b8d9b2876867faf1eb593cc347ebf02df89a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Mar 17 12:19:24 2018 +1000
gnu: diamond: Update to 0.9.19.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit f38ac742e6f542110cf838646a35c325201def51
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Mar 4 10:32:56 2018 +1000
gnu: mash: Update to 2.0.
* gnu/packages/bioinformatics.scm (mash): Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit 049edeb24cdc3727a9a581b3c83dc9237faac215
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Mar 30 12:24:59 2018 +1000
gnu: ruby-2.3: Update to 2.3.7.
* gnu/packages/ruby.scm (ruby-2.3): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit bb3359ab8e3c20eb91d61509b5ab364d03c9ec3b
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Feb 18 00:09:17 2018 +1000
gnu: ruby-2.4.3: Update rubygems to 2.7.6.
This fixes the security issues des
benwoodcroft pushed a change to branch master
in repository guix.
from 1ecbd85 gnu: ghc-mtl: Remove ghc-transformers from inputs.
new bb3359a gnu: ruby-2.4.3: Update rubygems to 2.7.6.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 369eee8763ca34b427860a86c8fe2db0963b52ae
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Feb 17 12:44:29 2018 +1000
gnu: vsearch: Update to 2.7.1.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from 4e1efba services: xorg: Import (ice-9 rdelim).
new 369eee8 gnu: vsearch: Update to 2.7.1.
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benwoodcroft pushed a commit to branch master
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commit 5ebc8e7f41bfc292dedb9de3bf13b54bc0d0d2dd
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Feb 16 08:13:24 2018 +1000
gnu: diamond: Update to 0.9.18.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from aabcb6e gnu: python-elasticsearch: Update to 6.1.1.
new 5ebc8e7 gnu: diamond: Update to 0.9.18.
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benwoodcroft pushed a change to branch master
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from 34a7b7d gnu: libdvdnav@4: Remove variable.
new 119c09c gnu: vsearch: Update to 2.7.0.
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commit 119c09c2196a2c4aa1cd9dbeec7a38a9dae0a1d6
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Feb 14 07:43:19 2018 +1000
gnu: vsearch: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 7502badb81311df8ded0202c99b7cada31511678
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Feb 2 22:12:18 2018 +1000
gnu: diamond: Update to 0.9.17.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from 9b94ced gnu: u-boot: Remove surplus flag in 'install phase.
new a9b3476 gnu: Add fann.
new 7502bad gnu: diamond: Update to 0.9.17.
The 2 revisions listed above as "new" are entirely new to this
thored-by: Ben Woodcroft <donttrust...@gmail.com>
---
gnu/packages/machine-learning.scm | 35 +++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index bd13ced..93d6027 100644
--- a/gnu/pack
benwoodcroft pushed a commit to branch master
in repository guix.
commit ae8522d2659f6a37a2f9c9f85849d38eadec6e0c
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Jan 27 10:21:06 2018 +1000
gnu: diamond: Update to 0.9.16.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from c5730ff gnu: xmlsec: Update to 1.2.25.
new ae8522d gnu: diamond: Update to 0.9.16.
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from b1de612 gnu: appstream-glib: Update to 0.7.5.
new a81f7eb gnu: diamond: Update to 0.9.15.
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benwoodcroft pushed a commit to branch master
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commit a81f7eb858bf7e320d4dccde183d303247b6d47a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Jan 26 12:47:02 2018 +1000
gnu: diamond: Update to 0.9.15.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3146f22dec5de4ad06cfaed5f686e677e2ba6a56
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Jan 10 16:41:06 2018 +1000
gnu: mafft: Update to 7.313.
* gnu/packages/bioinformatics.scm (mafft):
benwoodcroft pushed a change to branch master
in repository guix.
from d9a38cc gnu: syncthing: Update to 0.14.43.
new 3146f22 gnu: mafft: Update to 7.313.
new f6e2d86 gnu: seqmagick: Use 'pypi-uri'.
The 2 revisions listed above as "new" are entirely new to this
benwoodcroft pushed a commit to branch master
in repository guix.
commit f6e2d86f8e9d4d96954c4f2baa01d7c167626373
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Jan 10 16:44:11 2018 +1000
gnu: seqmagick: Use 'pypi-uri'.
* gnu/packages/bioinformatics.scm (seq
benwoodcroft pushed a change to branch master
in repository guix.
from 5424f9b gnu: ledger: Fix test failures.
new 39fb853 gnu: seqmagick: Update to 0.7.0.
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commit 39fb853abe060973c0ca6f8b60a105b1a83e583b
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Jan 9 22:18:06 2018 +1000
gnu: seqmagick: Update to 0.7.0.
* gnu/packages/bioinformatics.scm (seq
benwoodcroft pushed a change to branch master
in repository guix.
from cad464a gnu: lookingglass: Update to a9.
new f14a658 gnu: vsearch: Update to 2.6.2.
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commit f14a6586ec415f4437a3d87f6e7d5018a5620948
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Dec 27 16:43:56 2017 +1000
gnu: vsearch: Update to 2.6.2.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 86637f18bec9566973e78bf417a63426b47287b5
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 15 13:47:57 2017 +1000
gnu: ruby: Replace with ruby-2.4.3 [fixes CVE-2017-17405].
* gnu/packages/ru
benwoodcroft pushed a change to branch master
in repository guix.
from 86383d6 gnu: yoshimi: Update to 1.5.5.
new 2713e39 gnu: ruby-2.3: Update to 2.3.6 [fixes CVE-2017-17405].
new 263c56d gnu: ruby-2.2: Update to 2.2.9 [fixes CVE-2017-17405].
new 6098a38
benwoodcroft pushed a commit to branch master
in repository guix.
commit 6098a386a90f63fc8c6f18c5edfce15320789941
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 15 13:47:46 2017 +1000
gnu: bedtools: Update to 2.27.1.
* gnu/packages/ruby.scm (bedtools):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2713e399eeffe36b3e7c6be5307323a1a24d774e
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 15 13:25:46 2017 +1000
gnu: ruby-2.3: Update to 2.3.6 [fixes CVE-2017-17405].
* gnu/packages/ru
benwoodcroft pushed a commit to branch master
in repository guix.
commit 263c56d293ca72af9c22bdd37fd8ac51677c1679
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Dec 15 13:26:12 2017 +1000
gnu: ruby-2.2: Update to 2.2.9 [fixes CVE-2017-17405].
* gnu/packages/ru
benwoodcroft pushed a change to branch master
in repository guix.
from aa29f8f gnu: gucharmap: Use glib-or-gtk-build-system.
new 4e0b358 gnu: diamond: Update to 0.9.14.
new 8a6cd65 gnu: python-scikit-learn: Patch test non-determinism.
The 2 revisions listed above as
benwoodcroft pushed a commit to branch master
in repository guix.
commit 8a6cd65a2a66107b5a1ae12138a9af0002f55983
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Dec 14 18:45:21 2017 +1000
gnu: python-scikit-learn: Patch test non-determinism.
* gnu/packages/patches/
benwoodcroft pushed a commit to branch master
in repository guix.
commit 4e0b3583eab7dd67c2e13ad614e48f8d31c59c90
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Dec 14 09:12:56 2017 +1000
gnu: diamond: Update to 0.9.14.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit a68e5860979773079387be5c522eb1d584e48c93
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Nov 14 08:25:43 2017 +1000
gnu: diamond: Update to 0.9.13.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a change to branch master
in repository guix.
from 5ccde20 gnu: Move test packages from perl to perl-check.
new a68e586 gnu: diamond: Update to 0.9.13.
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benwoodcroft pushed a commit to branch master
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commit 7c087150eccdbe589368a4ddbf119f66642afb5c
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Nov 11 09:33:08 2017 +1000
gnu: vsearch: Update to 2.6.0.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from 59da6f0 download: Work around bogus HTTP handling in Guile 2.2 <=
2.2.2.
new 7c08715 gnu: vsearch: Update to 2.6.0.
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benwoodcroft pushed a change to branch master
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from e5f748a gnu: totem: Enable parallel build.
new da4a707 gnu: roary: Update to 3.11.0.
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commit da4a707c880c39f95f596bc1b1da99a20f5b60ef
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Nov 9 18:12:23 2017 +1000
gnu: roary: Update to 3.11.0.
* gnu/packages/bioinformatics.scm (roary):
benwoodcroft pushed a change to branch master
in repository guix.
from d3f1402 gnu: sssd: Disable failing test.
new 171ba24 gnu: diamond: Update to 0.9.12.
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commit 171ba2480f725bcea0cdf242007875924794e707
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Nov 4 10:51:44 2017 +1000
gnu: diamond: Update to 0.9.12.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit e126b797366049751a96186276305bccf53ed803
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Nov 1 09:18:52 2017 +1000
gnu: diamond: Update to 0.9.11.
* gnu/packages/bioinformatics.scm (diamond):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 03d6e9dd08ee995f0d9fb363478117b9af80aa01
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Nov 1 09:19:45 2017 +1000
gnu: vsearch: Update to 2.5.2.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from e6ee135 gnu: libfilezilla: Update to 0.11.1.
new e126b79 gnu: diamond: Update to 0.9.11.
new 03d6e9d gnu: vsearch: Update to 2.5.2.
The 2 revisions listed above as "new" are entirely new to this
benwoodcroft pushed a change to branch master
in repository guix.
from 8ba3f75 gnu: r-nloptr: Update package hash.
new ed5e9a3 gnu: vsearch: Update to 2.5.1.
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benwoodcroft pushed a commit to branch master
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commit ed5e9a33f844f617bbd40b29b0abdc654bc81c82
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Oct 26 19:55:29 2017 +1000
gnu: vsearch: Update to 2.5.1.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 6f141eff47826065c934a233ae95a2dff4d61a70
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Oct 25 09:27:45 2017 +1000
gnu: bwa: Update to 0.7.17.
* gnu/packages/bioinformatics.scm (bwa):
benwoodcroft pushed a commit to branch master
in repository guix.
commit ae6e00f6f955fd0f099f153b469f956c51302c59
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed Oct 25 09:25:05 2017 +1000
gnu: bwa: Change source URL to GitHub.
* gnu/packages/bioinformatics.sc
benwoodcroft pushed a change to branch master
in repository guix.
from 85c991b gnu: Add perl-moox-options.
new ae6e00f gnu: bwa: Change source URL to GitHub.
new 6f141ef gnu: bwa: Update to 0.7.17.
The 2 revisions listed above as "new" are entirely new to this
benwoodcroft pushed a change to branch master
in repository guix.
from ecfcb2e gnu: linux-libre: Update to 4.13.5.
new 3ae76f7 gnu: vsearch: Update to 2.5.0.
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benwoodcroft pushed a commit to branch master
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commit 3ae76f7f57706cf5cc4144d4ff62968e3d4c3aa4
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Oct 7 09:42:55 2017 +1000
gnu: vsearch: Update to 2.5.0.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a change to branch master
in repository guix.
from 08d9784 gnu: autoconf-archive: Update to 2017.09.28.
new c835503 gnu: ruby-method-source: Update to 0.9.0.
new 1960d4f gnu: ruby-pry: Update to 0.11.1.
The 2 revisions listed above as "new" are
benwoodcroft pushed a commit to branch master
in repository guix.
commit c83550372acf1d1eca92e181e0e689d036963e6d
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Oct 2 22:06:25 2017 +1000
gnu: ruby-method-source: Update to 0.9.0.
* gnu/packages/ruby.scm (ruby-
benwoodcroft pushed a commit to branch master
in repository guix.
commit 1960d4fdeacde625c9c710a71efe696db057b926
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Oct 2 21:59:15 2017 +1000
gnu: ruby-pry: Update to 0.11.1.
* gnu/packages/ruby.scm (ruby-pry):
benwoodcroft pushed a change to branch master
in repository guix.
from a4314af gnu: you-get: Update to 0.4.915.
new 8c86490 gnu: proteinortho: Update to 5.16b.
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benwoodcroft pushed a commit to branch master
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commit 8c864901b6bda70c4c6966f07d5c2d5cd4b4abf1
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Sep 23 18:10:14 2017 +1000
gnu: proteinortho: Update to 5.16b.
* gnu/packages/bioinformatics.scm (protei
benwoodcroft pushed a commit to branch master
in repository guix.
commit c351e8cea5aff6aea434953f94c943d1e2224ce8
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Sep 17 19:51:06 2017 +1000
gnu: ruby-2.3: Update to 2.3.5. Fix CVE-2017-{0898,10784,14033,14064}.
benwoodcroft pushed a change to branch master
in repository guix.
from 0329f6f gnu: efl: Hardcode libcurl path.
new 312e8a9 ruby: Update replacement to 2.4.2. Fix
CVE-2017-{0898,10784,14033,14064}.
new c351e8c gnu: ruby-2.3: Update to 2.3.5. Fix
benwoodcroft pushed a commit to branch master
in repository guix.
commit 312e8a9993bfcc85782bc7090b6cb06027dd4449
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Sep 17 11:31:49 2017 +1000
ruby: Update replacement to 2.4.2. Fix CVE-2017-{0898,10784,14033,14064}.
benwoodcroft pushed a commit to branch master
in repository guix.
commit 86805c1ba39d15637e69fd4cf74839ba9af0e174
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sun Sep 17 20:06:22 2017 +1000
gnu: ruby-2.2: Update to 2.2.8. Fix CVE-2017-{0898,10784,14033,14064}.
benwoodcroft pushed a commit to branch master
in repository guix.
commit f76d56d2868e4339915c42d3d9b93c1cb38e7e92
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Aug 15 18:20:17 2017 +1000
gnu: Add python-pastel.
* gnu/packages/graphics.scm (python-pastel): New va
benwoodcroft pushed a commit to branch master
in repository guix.
commit da1f7a9e16d7debd59b8e1d39291cdf4cc4f6ea0
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Aug 5 12:10:00 2017 +1000
gnu: python-orator: Move to (gnu packages databases).
* gnu/packages/pyth
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5eebe8dcf746fb6e53a2e9d9d8bed7177de62806
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Aug 15 18:22:48 2017 +1000
gnu: python-cleo: Update to 0.6.1.
* gnu/packages/databases.scm (pytho
benwoodcroft pushed a commit to branch master
in repository guix.
commit 00c788824172d0f942cbee274c96941c505596f7
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Aug 15 18:25:07 2017 +1000
gnu: python-pygments: Update to 2.2.0.
* gnu/packages/databases.scm (
benwoodcroft pushed a commit to branch master
in repository guix.
commit 89c3eaaa983e741b93544d6e67ae2123cba03616
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Aug 5 12:09:58 2017 +1000
gnu: Add python-pendulum.
* gnu/packages/time.scm (python-pendulum): New va
benwoodcroft pushed a commit to branch master
in repository guix.
commit 77e5c370322399bc4e6570c6a25e7e2676379085
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Aug 5 12:09:59 2017 +1000
gnu: python-orator: Update to 0.9.7.
* gnu/packages/python.scm (python-
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5d20e1ecafe54e417ea58bc668cfd1ca89ca2dcd
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Aug 5 12:09:57 2017 +1000
gnu: Add python-pytzdata.
* gnu/packages/time.scm (python-pytzdata): New va
benwoodcroft pushed a change to branch master
in repository guix.
from 4db733e gnu: Add
hunspell-dict-fr{,moderne,reforme1990,toutesvariantes}.
new 04fb451 gnu: Add python-backpack.
new 5d20e1e gnu: Add python-pytzdata.
new 89c3eaa gnu: Add python-pendulum.
benwoodcroft pushed a commit to branch master
in repository guix.
commit 963926bc78cf79fab2fea26aca6c760c91ecf4f2
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Tue Aug 15 17:58:05 2017 +1000
gnu: python-pyaml: Update to 17.7.2.
* gnu/packages/databases.scm (python
benwoodcroft pushed a commit to branch master
in repository guix.
commit 04fb4516f4b619cf663dead171a14110e72d13e1
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Sat Aug 5 12:09:56 2017 +1000
gnu: Add python-backpack.
* gnu/packages/python.scm (python-backpack): New va
benwoodcroft pushed a change to branch master
in repository guix.
from 6bda496 gnu: icedtea-8: Install the nss.cfg file to JRE.
new d8661f5 gnu: ruby-activesupport: Update to 5.1.4.
The 1 revisions listed above as "new" are entirely new to this
repository and will be described
benwoodcroft pushed a commit to branch master
in repository guix.
commit d8661f52b1b9fcc26d4a4705e61dca4ac88f5463
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Mon Sep 11 21:43:20 2017 +1000
gnu: ruby-activesupport: Update to 5.1.4.
* gnu/packages/ruby.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit 25bd1fc1c12ee2dfbcb12daf36f25285a4f7e55a
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 1 13:59:28 2017 +0800
gnu: metabat: Update to 2.12.1.
* gnu/packages/patches/metabat-remove-compi
benwoodcroft pushed a commit to branch master
in repository guix.
commit f4bf420c84f8d3b06eb448e0b3d80125203cc836
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Fri Sep 1 14:45:38 2017 +0800
gnu: vsearch: Update to 2.4.4.
* gnu/packages/bioinformatics.scm (vsearch):
benwoodcroft pushed a commit to branch master
in repository guix.
commit 0691851a64382090c6deb30b967217725bdaaad6
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Aug 31 12:37:05 2017 +0800
gnu: bioinformatics: Work around more "dotless @INC" build failures.
benwoodcroft pushed a change to branch master
in repository guix.
from c959e5a gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
new 0691851 gnu: bioinformatics: Work around more "dotless @INC"
build failures.
The 1 revisions listed above as "new" are entirely new to this
benwoodcroft pushed a commit to branch master
in repository guix.
commit 9770cbf9e2c2c723744f40040ae2d606dbc789a0
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Aug 31 10:06:36 2017 +0800
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patche
benwoodcroft pushed a commit to branch master
in repository guix.
commit c959e5a1dc266325b2e4986a18bd98d1e37900ac
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Aug 31 10:26:21 2017 +0800
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}.
* gnu/packages/patche
benwoodcroft pushed a commit to branch master
in repository guix.
commit 690a904ad766dfecf78749d121af528a7a49fa77
Author: Ben Woodcroft <donttrust...@gmail.com>
Date: Thu Aug 31 09:31:54 2017 +0800
gnu: metabat: Update to 2.11.3.
* gnu/packages/bioinformatics.scm (metabat):
benwoodcroft pushed a change to branch master
in repository guix.
from 2d2e97b gnu: vlc: Fix build and clean up expression.
new 690a904 gnu: metabat: Update to 2.11.3.
new 9770cbf gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}.
new db54251 gnu:
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